Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   PXH68_RS06230 Genome accession   NZ_CP118733
Coordinates   1338596..1339258 (-) Length   220 a.a.
NCBI ID   WP_248028493.1    Uniprot ID   A0AA97A9D0
Organism   Streptococcus suivaginalis strain 29896     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1333596..1344258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS06215 (PXH68_06215) - 1334396..1335025 (-) 630 WP_248028490.1 Maf family protein -
  PXH68_RS06220 (PXH68_06220) - 1335146..1336081 (-) 936 WP_248028491.1 hypothetical protein -
  PXH68_RS06225 (PXH68_06225) comEC/celB 1336375..1338612 (-) 2238 WP_248028492.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PXH68_RS06230 (PXH68_06230) comEA/celA/cilE 1338596..1339258 (-) 663 WP_248028493.1 helix-hairpin-helix domain-containing protein Machinery gene
  PXH68_RS06235 (PXH68_06235) - 1339325..1340071 (-) 747 WP_248028494.1 lysophospholipid acyltransferase family protein -
  PXH68_RS06240 - 1340237..1340382 (+) 146 Protein_1201 putative holin-like toxin -
  PXH68_RS06245 (PXH68_06245) - 1340546..1341295 (+) 750 WP_248028495.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PXH68_RS06250 (PXH68_06250) - 1341285..1341557 (+) 273 WP_248028496.1 GIY-YIG nuclease family protein -
  PXH68_RS06255 (PXH68_06255) - 1341572..1342183 (-) 612 WP_248028497.1 FMN-dependent NADH-azoreductase -
  PXH68_RS06260 (PXH68_06260) - 1342303..1342713 (-) 411 WP_248028498.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23546.20 Da        Isoelectric Point: 4.0036

>NTDB_id=794636 PXH68_RS06230 WP_248028493.1 1338596..1339258(-) (comEA/celA/cilE) [Streptococcus suivaginalis strain 29896]
MDTIKTYIEMLKEYKWQIALPAVAGLLLTTFLIFSQPAKSDQTGLTDFPQTEQTSSSSELVEETSTEVSEEPSQLVVDVK
GAVTEPGIYYLDAGSRVNDAVEAAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVLASMTTSSAMSQEEKNTSLVN
LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=794636 PXH68_RS06230 WP_248028493.1 1338596..1339258(-) (comEA/celA/cilE) [Streptococcus suivaginalis strain 29896]
ATGGATACGATTAAAACTTATATTGAAATGCTTAAAGAATACAAGTGGCAGATTGCTCTGCCAGCAGTTGCAGGTCTGCT
TCTGACGACATTCTTAATATTCAGCCAACCAGCTAAGTCAGATCAAACAGGACTGACAGATTTTCCACAGACCGAACAAA
CTTCTAGTAGCTCTGAGCTGGTCGAGGAAACCAGTACAGAAGTAAGTGAGGAGCCTAGCCAGCTGGTCGTTGATGTCAAA
GGGGCGGTGACAGAGCCCGGCATTTACTATCTTGATGCAGGAAGTCGGGTCAATGATGCAGTTGAAGCAGCTGGCGGTTT
GACCAGTCAGGCAGACCCCAAGTCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTGGTCTATGTGGCAAGCAAGG
ACGAAAATATCTCGGTGCTTGCCAGCATGACTACTAGCTCTGCTATGTCCCAAGAAGAAAAAAATACCAGTCTAGTCAAT
TTGAATACGGCGACCGAGGCGGACCTGCAGACCATTTCGGGCATTGGTGCCAAGCGAGCGACAGACATTATCGCCTATCG
TGAGGCAAACGGTGGATTCAAGTCGGTGGACGACCTCAACAATGTATCGGGCATAGGCGACAAGACCATGGAAAGCATCC
GACCTTATGTCACAGTTGAGTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(155-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.772

99.545

0.495
  comEA/celA/cilE Streptococcus pneumoniae D39

49.772

99.545

0.495
  comEA/celA/cilE Streptococcus pneumoniae R6

49.772

99.545

0.495
  comEA/celA/cilE Streptococcus mitis NCTC 12261

49.772

99.545

0.495
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.315

99.545

0.491
  comEA/celA/cilE Streptococcus mitis SK321

47.297

100

0.477
  comEA Streptococcus thermophilus LMD-9

59.494

71.818

0.427
  comEA Lactococcus lactis subsp. cremoris KW2

38.249

98.636

0.377
  comEA Bacillus subtilis subsp. subtilis str. 168

38.863

95.909

0.373