Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   PXH68_RS00640 Genome accession   NZ_CP118733
Coordinates   101158..102195 (+) Length   345 a.a.
NCBI ID   WP_248028795.1    Uniprot ID   A0AA96VEN7
Organism   Streptococcus suivaginalis strain 29896     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 96158..107195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS00625 (PXH68_00625) - 98873..99232 (+) 360 WP_105117566.1 DUF1033 family protein -
  PXH68_RS00630 (PXH68_00630) - 99242..100210 (-) 969 WP_248028796.1 S66 peptidase family protein -
  PXH68_RS00635 (PXH68_00635) comYA 100296..101234 (+) 939 WP_172015367.1 competence type IV pilus ATPase ComGA Machinery gene
  PXH68_RS00640 (PXH68_00640) comYB 101158..102195 (+) 1038 WP_248028795.1 competence type IV pilus assembly protein ComGB Machinery gene
  PXH68_RS00645 (PXH68_00645) comYC 102197..102478 (+) 282 WP_172015368.1 competence type IV pilus major pilin ComGC Machinery gene
  PXH68_RS00650 (PXH68_00650) comGD 102459..102866 (+) 408 WP_172015369.1 competence type IV pilus minor pilin ComGD -
  PXH68_RS00655 (PXH68_00655) comYE 102838..103131 (+) 294 WP_024385126.1 competence type IV pilus minor pilin ComGE Machinery gene
  PXH68_RS00660 (PXH68_00660) comGF/cglF 103118..103552 (+) 435 WP_044676306.1 competence type IV pilus minor pilin ComGF Machinery gene
  PXH68_RS00665 (PXH68_00665) comGG 103530..104051 (+) 522 WP_172015370.1 competence type IV pilus minor pilin ComGG -
  PXH68_RS00670 (PXH68_00670) comYH 104101..105054 (+) 954 WP_172015371.1 class I SAM-dependent methyltransferase Machinery gene
  PXH68_RS00675 (PXH68_00675) - 105105..106292 (+) 1188 WP_172015372.1 acetate kinase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39034.94 Da        Isoelectric Point: 8.5872

>NTDB_id=794608 PXH68_RS00640 WP_248028795.1 101158..102195(+) (comYB) [Streptococcus suivaginalis strain 29896]
MRKLIAFLQQDISVFGRQKQKKLPFDRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
SDLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNAATV
LINHLPTIFLSLCGLSLVAVLAGLVWFRKTNKIKVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFQEIGQDLEQSLSNGQSFHEHIKTYVFFKRELSLIVEYGQVKSKLGSELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=794608 PXH68_RS00640 WP_248028795.1 101158..102195(+) (comYB) [Streptococcus suivaginalis strain 29896]
ATGCGCAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCTTTTGATCG
CCAGCGTAAGGTCATTGAACTTTTCAATAATCTTTTTGCCAGCGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCGGATGGGCTGTTAGCAGGCAAACCCTTTTCAAGTTTGCTT
TCGGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTGGCAGAAGTTCATGGCAATACCAGCCTGAGTTTGAG
CCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAACTGATTGAGGTGGCGACCTATCCGATTATCTTAC
TAGGTTTTTTGCTCTTGATTATGCTGGGCTTGAAAAACTATCTTTTGCCCCAGTTGGAGGAGGGCAATGCAGCGACCGTG
CTGATTAATCATCTGCCGACTATCTTTTTGTCCCTCTGTGGACTTAGTTTGGTGGCGGTCTTGGCTGGTCTTGTTTGGTT
TCGCAAAACTAACAAAATCAAGGTCTTTTCCTGCTTAGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATCTGA
CGGCTTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTACCGCAGATTGTGGGCTTGATGCAGGAG
CAGCAATCGCAGCTCTTTCAGGAGATTGGACAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGCTTTCACGAACACAT
CAAGACTTACGTCTTTTTTAAGCGAGAGCTGAGTTTGATTGTCGAGTATGGTCAGGTCAAGTCCAAGTTGGGGAGCGAGT
TGACAGTTTATGCAGCCGAGTGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTAGCCCTAATGGTCGTTCTTATCTACGCAGCCATGCTGCTGCCGATTTATCAAAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.743

99.13

0.632
  comGB/cglB Streptococcus mitis NCTC 12261

60.896

97.101

0.591
  comYB Streptococcus mutans UA140

59.184

99.42

0.588
  comYB Streptococcus mutans UA159

59.184

99.42

0.588
  comGB/cglB Streptococcus mitis SK321

60.597

97.101

0.588
  comGB/cglB Streptococcus pneumoniae Rx1

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae D39

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae R6

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae TIGR4

60.299

97.101

0.586
  comGB Lactococcus lactis subsp. cremoris KW2

50.148

97.681

0.49