Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | PXH68_RS00670 | Genome accession | NZ_CP118733 |
| Coordinates | 104101..105054 (+) | Length | 317 a.a. |
| NCBI ID | WP_172015371.1 | Uniprot ID | A0AA96VS71 |
| Organism | Streptococcus suivaginalis strain 29896 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 99101..110054
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PXH68_RS00630 (PXH68_00630) | - | 99242..100210 (-) | 969 | WP_248028796.1 | S66 peptidase family protein | - |
| PXH68_RS00635 (PXH68_00635) | comYA | 100296..101234 (+) | 939 | WP_172015367.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| PXH68_RS00640 (PXH68_00640) | comYB | 101158..102195 (+) | 1038 | WP_248028795.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| PXH68_RS00645 (PXH68_00645) | comYC | 102197..102478 (+) | 282 | WP_172015368.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| PXH68_RS00650 (PXH68_00650) | comGD | 102459..102866 (+) | 408 | WP_172015369.1 | competence type IV pilus minor pilin ComGD | - |
| PXH68_RS00655 (PXH68_00655) | comYE | 102838..103131 (+) | 294 | WP_024385126.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| PXH68_RS00660 (PXH68_00660) | comGF/cglF | 103118..103552 (+) | 435 | WP_044676306.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| PXH68_RS00665 (PXH68_00665) | comGG | 103530..104051 (+) | 522 | WP_172015370.1 | competence type IV pilus minor pilin ComGG | - |
| PXH68_RS00670 (PXH68_00670) | comYH | 104101..105054 (+) | 954 | WP_172015371.1 | class I SAM-dependent methyltransferase | Machinery gene |
| PXH68_RS00675 (PXH68_00675) | - | 105105..106292 (+) | 1188 | WP_172015372.1 | acetate kinase | - |
| PXH68_RS00680 (PXH68_00680) | - | 106662..107213 (+) | 552 | WP_172015373.1 | folate family ECF transporter S component | - |
| PXH68_RS00685 (PXH68_00685) | - | 107270..108526 (+) | 1257 | WP_248028794.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| PXH68_RS00690 (PXH68_00690) | pepA | 108571..109632 (-) | 1062 | WP_205031712.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35726.71 Da Isoelectric Point: 4.3650
>NTDB_id=794612 PXH68_RS00670 WP_172015371.1 104101..105054(+) (comYH) [Streptococcus suivaginalis strain 29896]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETDLVVTNNKALKQLDLTKEEWRRAFQFLFIKANQT
EPMQYNHQFTPDSIGFILTFLLDQLVSQDSVTVLEIGSGTGNLAQTILNASQKKLDYLGIEIDDLLIDLSASMADVMQAE
ISFAQGDAVRPQILKESQVIIADLPIGFYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGYAILLAPNDLLSSPQ
SSLLKEWLQEQASIVAMIALPPSLFGQQAMAKSIFVLQKKTNQAPAAFVYPLQSVQEAETIRDFMVNFKKWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETDLVVTNNKALKQLDLTKEEWRRAFQFLFIKANQT
EPMQYNHQFTPDSIGFILTFLLDQLVSQDSVTVLEIGSGTGNLAQTILNASQKKLDYLGIEIDDLLIDLSASMADVMQAE
ISFAQGDAVRPQILKESQVIIADLPIGFYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGYAILLAPNDLLSSPQ
SSLLKEWLQEQASIVAMIALPPSLFGQQAMAKSIFVLQKKTNQAPAAFVYPLQSVQEAETIRDFMVNFKKWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=794612 PXH68_RS00670 WP_172015371.1 104101..105054(+) (comYH) [Streptococcus suivaginalis strain 29896]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTTGGCACCAA
TATCTATGACGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGGTCAGCATGAAACGGACCTTGTTGTTACTAATAACA
AGGCCTTGAAACAACTGGATTTAACCAAGGAAGAATGGCGCCGTGCCTTCCAATTTTTGTTTATAAAGGCCAATCAGACA
GAGCCCATGCAGTACAATCACCAGTTCACCCCTGACAGTATTGGGTTTATTTTGACCTTCCTTTTGGACCAGTTGGTGTC
TCAAGACTCTGTGACTGTCTTAGAAATTGGTTCGGGGACTGGGAATTTGGCGCAAACTATTCTCAATGCCAGCCAAAAGA
AGCTAGACTATCTAGGAATTGAAATTGACGACTTGTTGATTGATTTGTCGGCCAGCATGGCAGACGTTATGCAGGCAGAG
ATTTCTTTTGCCCAGGGCGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAGTCATTATTGCGGACCTGCCGATTGG
TTTTTATCCAGATGACCAGATTGCCAGTCGCTATCAGGTGGCGAGCCAGACAGAGCATACCTACGCCCACCATTTGCTAA
TGGAGCAATCCCTCAAGTATCTGGAAAAAGATGGGTATGCGATTCTACTAGCTCCCAATGACCTCTTGTCTAGTCCGCAA
AGTTCTCTTTTGAAAGAATGGTTGCAGGAGCAGGCTAGCATTGTGGCTATGATTGCTTTGCCGCCAAGTTTGTTTGGGCA
ACAGGCTATGGCAAAATCGATTTTTGTCTTACAGAAAAAGACCAATCAGGCACCAGCAGCTTTTGTTTATCCACTTCAAA
GTGTCCAAGAAGCAGAAACTATTCGAGACTTTATGGTCAATTTTAAAAAATGGAAGCAAGAAAATGCAATTTAG
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTTGGCACCAA
TATCTATGACGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGGTCAGCATGAAACGGACCTTGTTGTTACTAATAACA
AGGCCTTGAAACAACTGGATTTAACCAAGGAAGAATGGCGCCGTGCCTTCCAATTTTTGTTTATAAAGGCCAATCAGACA
GAGCCCATGCAGTACAATCACCAGTTCACCCCTGACAGTATTGGGTTTATTTTGACCTTCCTTTTGGACCAGTTGGTGTC
TCAAGACTCTGTGACTGTCTTAGAAATTGGTTCGGGGACTGGGAATTTGGCGCAAACTATTCTCAATGCCAGCCAAAAGA
AGCTAGACTATCTAGGAATTGAAATTGACGACTTGTTGATTGATTTGTCGGCCAGCATGGCAGACGTTATGCAGGCAGAG
ATTTCTTTTGCCCAGGGCGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAGTCATTATTGCGGACCTGCCGATTGG
TTTTTATCCAGATGACCAGATTGCCAGTCGCTATCAGGTGGCGAGCCAGACAGAGCATACCTACGCCCACCATTTGCTAA
TGGAGCAATCCCTCAAGTATCTGGAAAAAGATGGGTATGCGATTCTACTAGCTCCCAATGACCTCTTGTCTAGTCCGCAA
AGTTCTCTTTTGAAAGAATGGTTGCAGGAGCAGGCTAGCATTGTGGCTATGATTGCTTTGCCGCCAAGTTTGTTTGGGCA
ACAGGCTATGGCAAAATCGATTTTTGTCTTACAGAAAAAGACCAATCAGGCACCAGCAGCTTTTGTTTATCCACTTCAAA
GTGTCCAAGAAGCAGAAACTATTCGAGACTTTATGGTCAATTTTAAAAAATGGAAGCAAGAAAATGCAATTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
61.392 |
99.685 |
0.612 |
| comYH | Streptococcus mutans UA159 |
61.076 |
99.685 |
0.609 |