Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   PXH68_RS00655 Genome accession   NZ_CP118733
Coordinates   102838..103131 (+) Length   97 a.a.
NCBI ID   WP_024385126.1    Uniprot ID   A0AA96VDR6
Organism   Streptococcus suivaginalis strain 29896     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 97838..108131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS00625 (PXH68_00625) - 98873..99232 (+) 360 WP_105117566.1 DUF1033 family protein -
  PXH68_RS00630 (PXH68_00630) - 99242..100210 (-) 969 WP_248028796.1 S66 peptidase family protein -
  PXH68_RS00635 (PXH68_00635) comYA 100296..101234 (+) 939 WP_172015367.1 competence type IV pilus ATPase ComGA Machinery gene
  PXH68_RS00640 (PXH68_00640) comYB 101158..102195 (+) 1038 WP_248028795.1 competence type IV pilus assembly protein ComGB Machinery gene
  PXH68_RS00645 (PXH68_00645) comYC 102197..102478 (+) 282 WP_172015368.1 competence type IV pilus major pilin ComGC Machinery gene
  PXH68_RS00650 (PXH68_00650) comGD 102459..102866 (+) 408 WP_172015369.1 competence type IV pilus minor pilin ComGD -
  PXH68_RS00655 (PXH68_00655) comYE 102838..103131 (+) 294 WP_024385126.1 competence type IV pilus minor pilin ComGE Machinery gene
  PXH68_RS00660 (PXH68_00660) comGF/cglF 103118..103552 (+) 435 WP_044676306.1 competence type IV pilus minor pilin ComGF Machinery gene
  PXH68_RS00665 (PXH68_00665) comGG 103530..104051 (+) 522 WP_172015370.1 competence type IV pilus minor pilin ComGG -
  PXH68_RS00670 (PXH68_00670) comYH 104101..105054 (+) 954 WP_172015371.1 class I SAM-dependent methyltransferase Machinery gene
  PXH68_RS00675 (PXH68_00675) - 105105..106292 (+) 1188 WP_172015372.1 acetate kinase -
  PXH68_RS00680 (PXH68_00680) - 106662..107213 (+) 552 WP_172015373.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10843.69 Da        Isoelectric Point: 8.0134

>NTDB_id=794610 PXH68_RS00655 WP_024385126.1 102838..103131(+) (comYE) [Streptococcus suivaginalis strain 29896]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQDWELEQQEVLNLAQMAVQTEQDNLALNGVTVQVQRTAD
KIIVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=794610 PXH68_RS00655 WP_024385126.1 102838..103131(+) (comYE) [Streptococcus suivaginalis strain 29896]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACCCTGGTAACCAT
TTGCAGCTTGATTTTGTCAGCTGTGGATGCGGGACGTAGGCGACAGGATTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGAGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCGGAT
AAGATCATTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

39.13

94.845

0.371
  comGE/cglE Streptococcus pneumoniae D39

39.13

94.845

0.371
  comGE/cglE Streptococcus pneumoniae R6

39.13

94.845

0.371
  comGE/cglE Streptococcus pneumoniae TIGR4

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis SK321

38.043

94.845

0.361
  comGE/cglE Streptococcus mitis NCTC 12261

38.043

94.845

0.361