Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Herbaro_RS01530 Genome accession   NZ_CP118632
Coordinates   342167..342694 (-) Length   175 a.a.
NCBI ID   WP_275012089.1    Uniprot ID   -
Organism   Herbaspirillum sp. WKF16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337167..347694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Herbaro_RS01500 (Herbaro_01500) - 338108..338983 (+) 876 WP_275012083.1 ATP-binding protein -
  Herbaro_RS01505 (Herbaro_01505) mutT 338983..339402 (+) 420 WP_275012084.1 8-oxo-dGTP diphosphatase MutT -
  Herbaro_RS01510 (Herbaro_01510) yacG 339517..339702 (-) 186 WP_275012085.1 DNA gyrase inhibitor YacG -
  Herbaro_RS01515 (Herbaro_01515) zapD 339712..340467 (-) 756 WP_275012086.1 cell division protein ZapD -
  Herbaro_RS01520 (Herbaro_01520) coaE 340672..341295 (-) 624 WP_275012087.1 dephospho-CoA kinase -
  Herbaro_RS01525 (Herbaro_01525) pilD 341304..342167 (-) 864 WP_275012088.1 A24 family peptidase Machinery gene
  Herbaro_RS01530 (Herbaro_01530) pilC 342167..342694 (-) 528 WP_275012089.1 type II secretion system F family protein Machinery gene
  Herbaro_RS01535 (Herbaro_01535) - 342850..343116 (-) 267 Protein_301 type II secretion system F family protein -
  Herbaro_RS01540 (Herbaro_01540) - 342997..343413 (+) 417 WP_275014087.1 hypothetical protein -
  Herbaro_RS01545 (Herbaro_01545) pilF 343397..344521 (-) 1125 WP_275013937.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  Herbaro_RS01550 (Herbaro_01550) - 344767..346077 (-) 1311 WP_275012090.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18190.46 Da        Isoelectric Point: 7.0157

>NTDB_id=794107 Herbaro_RS01530 WP_275012089.1 342167..342694(-) (pilC) [Herbaspirillum sp. WKF16]
MLGALGIASAQAWRRLPRLRAQVQRASLGLPLFGPLLRRAAIARWSRTFGTLLGAGVPLLETLETVAGAVGNVVYAEASL
AIREAARGGASLHGAMQAAGAFPDLAVQMVAVGEEAGALDAMLDKIAQFNEREVDDAVAALTSLMEPIIMAVLGILIGAL
VVAMYLPVFRMGSVV

Nucleotide


Download         Length: 528 bp        

>NTDB_id=794107 Herbaro_RS01530 WP_275012089.1 342167..342694(-) (pilC) [Herbaspirillum sp. WKF16]
GTGCTGGGCGCCCTGGGCATCGCTTCGGCGCAAGCCTGGCGCCGCCTGCCGCGCCTGCGGGCGCAGGTCCAGCGCGCCAG
CCTCGGGCTGCCGCTGTTCGGCCCGCTGCTGCGCCGGGCCGCCATCGCGCGCTGGAGCCGCACCTTCGGCACCCTGCTGG
GCGCCGGCGTGCCGCTGCTGGAGACCCTGGAGACCGTGGCCGGCGCCGTCGGCAACGTGGTCTACGCCGAGGCCAGCCTG
GCCATCCGCGAGGCCGCGCGCGGCGGCGCCTCGCTGCACGGCGCCATGCAGGCTGCCGGCGCCTTTCCCGACCTGGCCGT
GCAGATGGTGGCCGTAGGCGAGGAGGCCGGGGCGCTGGACGCCATGCTGGACAAGATCGCCCAGTTCAACGAACGGGAGG
TCGACGACGCCGTCGCCGCGCTCACCAGCCTGATGGAACCGATTATCATGGCGGTTTTAGGTATCCTGATCGGCGCCCTG
GTAGTGGCAATGTACCTGCCGGTCTTCCGTATGGGGTCCGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(45-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

55.758

94.286

0.526
  pilC Acinetobacter baumannii D1279779

53.939

94.286

0.509
  pilC Pseudomonas stutzeri DSM 10701

50.595

96

0.486
  pilG Neisseria meningitidis 44/76-A

47.159

100

0.474
  pilC Legionella pneumophila strain ERS1305867

54.248

87.429

0.474
  pilG Neisseria gonorrhoeae MS11

50.676

84.571

0.429
  pilC Vibrio campbellii strain DS40M4

44.242

94.286

0.417
  pilC Thermus thermophilus HB27

43.59

89.143

0.389
  pilC Vibrio cholerae strain A1552

41.772

90.286

0.377