Detailed information NTG0794106

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Herbaro_RS01525
• Genome accession: NZ_CP118632
• Coordinates: 341304..342167 (-)
• Length: 287 a.a.
• NCBI ID: WP_275012088.1
• Uniprot ID: -
• Organism: Herbaspirillum sp. WKF16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 336304..347167

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Herbaro_RS01495 (Herbaro_01495)	argJ	336585..337820 (+)	1236	WP_275012082.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
Herbaro_RS01500 (Herbaro_01500)	-	338108..338983 (+)	876	WP_275012083.1	ATP-binding protein	-
Herbaro_RS01505 (Herbaro_01505)	mutT	338983..339402 (+)	420	WP_275012084.1	8-oxo-dGTP diphosphatase MutT	-
Herbaro_RS01510 (Herbaro_01510)	yacG	339517..339702 (-)	186	WP_275012085.1	DNA gyrase inhibitor YacG	-
Herbaro_RS01515 (Herbaro_01515)	zapD	339712..340467 (-)	756	WP_275012086.1	cell division protein ZapD	-
Herbaro_RS01520 (Herbaro_01520)	coaE	340672..341295 (-)	624	WP_275012087.1	dephospho-CoA kinase	-
Herbaro_RS01525 (Herbaro_01525)	pilD	341304..342167 (-)	864	WP_275012088.1	A24 family peptidase	Machinery gene
Herbaro_RS01530 (Herbaro_01530)	pilC	342167..342694 (-)	528	WP_275012089.1	type II secretion system F family protein	Machinery gene
Herbaro_RS01535 (Herbaro_01535)	-	342850..343116 (-)	267	Protein_301	type II secretion system F family protein	-
Herbaro_RS01540 (Herbaro_01540)	-	342997..343413 (+)	417	WP_275014087.1	hypothetical protein	-
Herbaro_RS01545 (Herbaro_01545)	pilF	343397..344521 (-)	1125	WP_275013937.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
Herbaro_RS01550 (Herbaro_01550)	-	344767..346077 (-)	1311	WP_275012090.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 30731.47 Da
• Isoelectric Point: 7.6805

>NTDB_id=794106 Herbaro_RS01525 WP_275012088.1 341304..342167(-) (pilD) [Herbaspirillum sp. WKF16]
MHFLAAWAEPNNCAIALAAALLGLLVGSFLNVVIHRLPQMMLRDTANFIAHERGEAQPYTGRYDLLLPRSACPHCQTPLP
PHHNVPVLSWLLLRGRCGECRAPIGLRYPAVELLTAGLFALAAWRFGAGLTGLAVMACGAFLVALAFIDAGTMLLPDDLT
LPLLWLGLLVNLNHRIAPLHDAVLGAAAGYAALWLIFWIFKLATGKEGLGYGDFKLMAALGAWLGWQALPLVLLSACAMG
AAAGIALVLAGRHQRGQALPFGPYLAIAGMLALLYGSDWLTFGIYDY

Nucleotide

• Length: 864 bp

>NTDB_id=794106 Herbaro_RS01525 WP_275012088.1 341304..342167(-) (pilD) [Herbaspirillum sp. WKF16]
ATGCATTTCCTCGCGGCCTGGGCCGAACCGAACAATTGCGCCATCGCGCTGGCAGCGGCCTTGCTGGGCCTGCTGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCGCAGATGATGCTGCGCGACACCGCCAACTTCATCGCCCATGAGCGCG
GCGAGGCGCAACCGTACACCGGACGCTACGACCTGCTGCTGCCGCGCTCGGCCTGCCCCCACTGCCAAACCCCTCTGCCG
CCGCACCACAACGTGCCGGTCCTGAGCTGGCTGCTGCTGCGCGGCCGCTGCGGCGAGTGCCGCGCCCCCATCGGGCTGCG
CTATCCGGCGGTCGAACTGCTCACGGCCGGCCTGTTCGCGCTGGCCGCCTGGCGCTTCGGCGCCGGCCTGACCGGGCTGG
CGGTGATGGCCTGCGGCGCCTTCCTGGTGGCGCTGGCCTTCATCGATGCCGGCACCATGCTGCTGCCCGACGACCTTACC
CTGCCGCTCCTGTGGCTGGGCCTGCTGGTCAACCTGAACCACCGCATCGCGCCGCTGCACGACGCGGTGCTGGGCGCGGC
CGCCGGCTATGCCGCGCTGTGGCTGATCTTCTGGATCTTCAAATTGGCCACCGGCAAGGAAGGCCTGGGCTACGGCGACT
TCAAGCTGATGGCCGCGCTGGGCGCCTGGCTGGGCTGGCAGGCGCTGCCGCTGGTGCTGCTGTCAGCCTGCGCGATGGGC
GCCGCGGCGGGCATCGCGCTGGTGCTCGCCGGCCGCCACCAGCGCGGCCAGGCCCTCCCCTTCGGACCTTATCTGGCGAT
TGCGGGTATGCTGGCGCTGCTGTACGGCAGCGACTGGCTGACCTTCGGCATTTACGACTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.434	93.031	0.488
pilD	Vibrio campbellii strain DS40M4	48.106	91.986	0.443
pilD	Acinetobacter baumannii D1279779	43.929	97.561	0.429
pilD	Neisseria gonorrhoeae MS11	47.826	88.153	0.422
pilD	Acinetobacter nosocomialis M2	43.214	97.561	0.422