Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PVT67_RS02300 Genome accession   NZ_CP118480
Coordinates   483281..484522 (+) Length   413 a.a.
NCBI ID   WP_301497402.1    Uniprot ID   -
Organism   Gallaecimonas kandeliae strain Q10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478281..489522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVT67_RS02280 (PVT67_02280) - 478945..479793 (+) 849 WP_301497394.1 universal stress protein -
  PVT67_RS02285 (PVT67_02285) nadC 479964..480839 (-) 876 WP_336407793.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PVT67_RS02290 (PVT67_02290) - 481094..481498 (+) 405 WP_301497398.1 pilin -
  PVT67_RS02295 (PVT67_02295) pilB 481556..483271 (+) 1716 WP_301497400.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PVT67_RS02300 (PVT67_02300) pilC 483281..484522 (+) 1242 WP_301497402.1 type II secretion system F family protein Machinery gene
  PVT67_RS02305 (PVT67_02305) pilD 484528..485391 (+) 864 WP_301497404.1 prepilin peptidase Machinery gene
  PVT67_RS02310 (PVT67_02310) coaE 485388..485990 (+) 603 WP_301497406.1 dephospho-CoA kinase -
  PVT67_RS02315 (PVT67_02315) zapD 486022..486759 (+) 738 WP_301497408.1 cell division protein ZapD -
  PVT67_RS02320 (PVT67_02320) yacG 486769..486942 (+) 174 WP_301497410.1 DNA gyrase inhibitor YacG -
  PVT67_RS02325 (PVT67_02325) ampD 487002..487544 (+) 543 WP_301497412.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PVT67_RS02330 (PVT67_02330) ampE 487541..488341 (+) 801 WP_301497414.1 regulatory signaling modulator protein AmpE -
  PVT67_RS02335 (PVT67_02335) pdhR 488475..489254 (+) 780 WP_301497417.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45586.83 Da        Isoelectric Point: 9.8492

>NTDB_id=792618 PVT67_RS02300 WP_301497402.1 483281..484522(+) (pilC) [Gallaecimonas kandeliae strain Q10]
MATAAAKRKIDTQKLEIFVWKGLNRRGEKVEGEMTGVRINDIKAQLRAQGITPKEVKRKPKSLFSFGQKIDMADIAAMTR
QLSTMLGAGVPLVQSLDIIAKGNKKDAVREMMVKISADVQGGTLLSEALAKYPLYFDSLYRDLVAAGEHAGAMETMFDRI
ATYKEKQEELKAKIKKALFYPSAIVFVAIVVMAILLIFVVPQFEDIFHSFGAELPAFTRLWISLSHAVQSSWYIILAVIL
AIAFAFRSMHRKSQDVRDKTDRFILRIPIVGPILHKASLARFARTLATTFAAGVPLIDGLASSAGASGNALYRDAILKVR
REVETGMQMNVAMRTTQVFPEMIIQMVMIGEESGSIDEMMSKVASIYEREVDDAVDGLMSLLEPAIMIVLGPIIGGLVVA
MYLPIFQLGQVVH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=792618 PVT67_RS02300 WP_301497402.1 483281..484522(+) (pilC) [Gallaecimonas kandeliae strain Q10]
ATGGCAACCGCAGCAGCCAAGAGAAAGATTGATACCCAGAAGCTGGAGATCTTCGTCTGGAAAGGCCTCAACCGCCGAGG
CGAAAAGGTCGAAGGGGAGATGACAGGGGTCAGGATCAACGACATCAAGGCCCAGCTCCGTGCCCAGGGCATTACCCCCA
AGGAAGTCAAGCGCAAACCCAAGTCACTGTTTTCCTTTGGCCAGAAGATAGACATGGCCGACATCGCGGCCATGACCCGC
CAGCTCTCCACCATGCTGGGGGCTGGTGTGCCCCTGGTGCAGTCATTGGATATCATCGCCAAGGGCAACAAGAAGGACGC
TGTGCGGGAGATGATGGTCAAGATCAGCGCCGACGTCCAGGGCGGGACCCTGCTCTCTGAAGCCCTGGCCAAGTACCCCC
TCTATTTCGATTCACTCTATCGAGATCTGGTGGCAGCGGGGGAGCATGCCGGTGCCATGGAGACCATGTTCGATCGCATT
GCCACCTACAAGGAGAAACAGGAGGAGCTGAAGGCCAAGATCAAGAAGGCGCTCTTCTATCCTTCCGCCATCGTCTTCGT
CGCCATAGTGGTAATGGCCATACTGCTGATCTTCGTGGTACCTCAGTTTGAGGATATCTTCCATTCCTTCGGTGCCGAGC
TGCCGGCCTTTACCCGCCTCTGGATAAGCCTATCCCATGCGGTGCAGAGTTCCTGGTATATCATTTTGGCCGTGATCCTG
GCGATTGCTTTTGCCTTCCGCTCCATGCATCGCAAGTCCCAGGATGTCAGGGACAAGACAGACAGGTTCATACTGCGGAT
CCCCATAGTGGGTCCCATATTGCACAAGGCCTCCCTTGCCCGTTTTGCTCGTACCCTGGCTACGACCTTTGCTGCAGGCG
TGCCCCTGATTGATGGCCTGGCCTCCAGTGCCGGCGCTTCCGGCAATGCACTTTACCGGGACGCCATCCTCAAGGTGCGC
CGGGAAGTGGAGACCGGCATGCAAATGAACGTGGCCATGCGCACCACCCAGGTCTTTCCAGAGATGATCATCCAGATGGT
GATGATCGGGGAGGAGTCCGGCTCCATAGACGAGATGATGTCCAAGGTGGCCAGCATCTATGAGCGGGAAGTGGACGATG
CCGTGGACGGCCTGATGAGCCTGCTGGAGCCAGCCATCATGATAGTACTGGGTCCTATCATCGGCGGCCTGGTCGTGGCA
ATGTATCTGCCGATCTTCCAGTTGGGACAAGTGGTGCATTGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.639

96.61

0.538
  pilC Acinetobacter baylyi ADP1

51.463

99.274

0.511
  pilC Legionella pneumophila strain ERS1305867

50.124

97.579

0.489
  pilC Acinetobacter baumannii D1279779

50

97.337

0.487
  pilC Vibrio cholerae strain A1552

45.074

98.305

0.443
  pilG Neisseria meningitidis 44/76-A

42.04

97.337

0.409
  pilC Vibrio campbellii strain DS40M4

42.25

96.852

0.409
  pilG Neisseria gonorrhoeae MS11

41.791

97.337

0.407