Detailed information NTG0792619

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PVT67_RS02305
• Genome accession: NZ_CP118480
• Coordinates: 484528..485391 (+)
• Length: 287 a.a.
• NCBI ID: WP_301497404.1
• Uniprot ID: -
• Organism: Gallaecimonas kandeliae strain Q10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 479528..490391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PVT67_RS02285 (PVT67_02285)	nadC	479964..480839 (-)	876	WP_336407793.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PVT67_RS02290 (PVT67_02290)	-	481094..481498 (+)	405	WP_301497398.1	pilin	-
PVT67_RS02295 (PVT67_02295)	pilB	481556..483271 (+)	1716	WP_301497400.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PVT67_RS02300 (PVT67_02300)	pilC	483281..484522 (+)	1242	WP_301497402.1	type II secretion system F family protein	Machinery gene
PVT67_RS02305 (PVT67_02305)	pilD	484528..485391 (+)	864	WP_301497404.1	prepilin peptidase	Machinery gene
PVT67_RS02310 (PVT67_02310)	coaE	485388..485990 (+)	603	WP_301497406.1	dephospho-CoA kinase	-
PVT67_RS02315 (PVT67_02315)	zapD	486022..486759 (+)	738	WP_301497408.1	cell division protein ZapD	-
PVT67_RS02320 (PVT67_02320)	yacG	486769..486942 (+)	174	WP_301497410.1	DNA gyrase inhibitor YacG	-
PVT67_RS02325 (PVT67_02325)	ampD	487002..487544 (+)	543	WP_301497412.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
PVT67_RS02330 (PVT67_02330)	ampE	487541..488341 (+)	801	WP_301497414.1	regulatory signaling modulator protein AmpE	-
PVT67_RS02335 (PVT67_02335)	pdhR	488475..489254 (+)	780	WP_301497417.1	pyruvate dehydrogenase complex transcriptional repressor PdhR	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 32207.48 Da
• Isoelectric Point: 7.7157

>NTDB_id=792619 PVT67_RS02305 WP_301497404.1 484528..485391(+) (pilD) [Gallaecimonas kandeliae strain Q10]
MQLMEFLGREPLWFTVFVLVFGLLVGSFLNVVIYRLPVMLERRWQRESRELLALEPLADQAPFNLMVPQSHCPKCHASVA
WYDNVPLLSWLILRGRCRHCKVAIPVRYPLVELVTGLMSGAVAWYFGPNWLTLAALLFTWILVALTFIDADTMLLPDDLT
LPLLWGGLLLSLYGGLVTPQQAILGASLGYLSLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWLGPWMLPQIILLSSIFG
VLWGIYSMVRKSSGSMPMPFGPFLAAAGWVALIWGQAINDWYLGMLH

Nucleotide

• Length: 864 bp

>NTDB_id=792619 PVT67_RS02305 WP_301497404.1 484528..485391(+) (pilD) [Gallaecimonas kandeliae strain Q10]
ATGCAGTTGATGGAATTCCTGGGCCGTGAGCCACTCTGGTTCACGGTCTTTGTTTTGGTATTCGGCCTCTTGGTGGGCAG
TTTCCTCAATGTAGTCATCTACCGCCTGCCGGTGATGCTGGAGCGGCGCTGGCAGAGGGAGAGCCGGGAGCTTTTGGCAT
TGGAGCCTTTGGCCGACCAGGCCCCTTTCAACCTGATGGTGCCCCAGAGCCACTGCCCCAAGTGCCATGCTTCCGTTGCC
TGGTACGACAATGTGCCGCTGCTCAGCTGGCTTATCCTCAGGGGCCGTTGCCGCCACTGCAAGGTGGCCATACCGGTACG
CTATCCCCTGGTGGAGCTGGTGACTGGCCTGATGTCAGGGGCCGTGGCCTGGTATTTTGGCCCAAACTGGCTGACCTTGG
CTGCACTGCTCTTTACCTGGATATTGGTAGCCCTGACCTTTATCGATGCCGACACCATGTTGCTGCCGGATGACCTTACC
CTGCCGCTGCTCTGGGGTGGCCTACTGCTGAGCCTCTACGGCGGCTTGGTGACCCCCCAACAGGCGATTCTGGGTGCCAG
CCTGGGCTACCTTTCTCTTTGGTCCGTTTACTGGGCCTTCAAACTGCTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGGCCTTGGGGGCCTGGCTTGGGCCTTGGATGTTGCCGCAGATCATCTTGCTGTCTTCCATCTTTGGT
GTGCTCTGGGGCATCTACAGCATGGTGCGCAAGAGCAGCGGCAGCATGCCCATGCCTTTCGGGCCCTTCCTGGCTGCCGC
CGGCTGGGTGGCCTTGATCTGGGGCCAGGCCATCAACGACTGGTACCTGGGGATGTTGCATTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	54.386	99.303	0.54
pilD	Vibrio cholerae strain A1552	54.386	99.303	0.54
pilD	Acinetobacter nosocomialis M2	52.222	94.077	0.491
pilD	Acinetobacter baumannii D1279779	51.481	94.077	0.484
pilD	Neisseria gonorrhoeae MS11	50.958	90.941	0.463