Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PVK35_RS17245 | Genome accession | NZ_CP118442 |
| Coordinates | 3555755..3556072 (+) | Length | 105 a.a. |
| NCBI ID | WP_226044674.1 | Uniprot ID | - |
| Organism | Aeromonas caviae strain CYEY0630 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3550755..3561072
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVK35_RS17220 (PVK35_17220) | - | 3551449..3552081 (-) | 633 | WP_039041319.1 | hemolysin III family protein | - |
| PVK35_RS17225 (PVK35_17225) | - | 3552273..3553778 (+) | 1506 | WP_274798803.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| PVK35_RS17230 (PVK35_17230) | - | 3553884..3554435 (+) | 552 | WP_039041321.1 | septation protein A | - |
| PVK35_RS17235 (PVK35_17235) | - | 3554460..3554756 (+) | 297 | WP_010675539.1 | YciI family protein | - |
| PVK35_RS17240 (PVK35_17240) | cysQ | 3554820..3555590 (-) | 771 | WP_223955744.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| PVK35_RS17245 (PVK35_17245) | comEA | 3555755..3556072 (+) | 318 | WP_226044674.1 | ComEA family DNA-binding protein | Machinery gene |
| PVK35_RS17250 (PVK35_17250) | galU | 3556167..3557078 (+) | 912 | WP_048206971.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| PVK35_RS17255 (PVK35_17255) | - | 3557292..3558689 (+) | 1398 | WP_041212400.1 | peptide MFS transporter | - |
| PVK35_RS17260 (PVK35_17260) | - | 3558760..3559731 (-) | 972 | WP_029314797.1 | response regulator | - |
| PVK35_RS17265 (PVK35_17265) | - | 3560007..3560681 (+) | 675 | WP_201902444.1 | DnaT-like ssDNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11004.93 Da Isoelectric Point: 10.1059
>NTDB_id=792604 PVK35_RS17245 WP_226044674.1 3555755..3556072(+) (comEA) [Aeromonas caviae strain CYEY0630]
MNKKTLIAVLLLGCLPLLSQPLLAADKAATKPVATTQVKESGKINLNTASAGELTALKGIGEKKAQAIIDHREKQGKFTS
VDQLADVSGIGPATLEANRDMIIVK
MNKKTLIAVLLLGCLPLLSQPLLAADKAATKPVATTQVKESGKINLNTASAGELTALKGIGEKKAQAIIDHREKQGKFTS
VDQLADVSGIGPATLEANRDMIIVK
Nucleotide
Download Length: 318 bp
>NTDB_id=792604 PVK35_RS17245 WP_226044674.1 3555755..3556072(+) (comEA) [Aeromonas caviae strain CYEY0630]
ATGAACAAGAAGACCCTGATCGCCGTACTGCTGTTGGGCTGCCTCCCCCTGTTGAGCCAACCTCTGCTGGCCGCCGACAA
GGCAGCGACCAAGCCTGTGGCCACCACCCAAGTCAAGGAGAGCGGCAAGATCAATCTCAATACCGCCAGTGCCGGCGAGC
TCACCGCCCTGAAGGGCATTGGCGAGAAGAAGGCACAGGCCATCATCGACCACAGGGAGAAGCAGGGCAAGTTCACCTCC
GTCGATCAACTGGCGGACGTCAGTGGCATCGGGCCTGCCACGCTGGAAGCAAACCGGGACATGATTATCGTCAAGTAA
ATGAACAAGAAGACCCTGATCGCCGTACTGCTGTTGGGCTGCCTCCCCCTGTTGAGCCAACCTCTGCTGGCCGCCGACAA
GGCAGCGACCAAGCCTGTGGCCACCACCCAAGTCAAGGAGAGCGGCAAGATCAATCTCAATACCGCCAGTGCCGGCGAGC
TCACCGCCCTGAAGGGCATTGGCGAGAAGAAGGCACAGGCCATCATCGACCACAGGGAGAAGCAGGGCAAGTTCACCTCC
GTCGATCAACTGGCGGACGTCAGTGGCATCGGGCCTGCCACGCTGGAAGCAAACCGGGACATGATTATCGTCAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
50 |
100 |
0.505 |
| comEA | Vibrio cholerae strain A1552 |
50 |
100 |
0.505 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
47.17 |
100 |
0.476 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
45.045 |
100 |
0.476 |
| comEA | Legionella pneumophila strain ERS1305867 |
44 |
95.238 |
0.419 |
| comEA | Legionella pneumophila str. Paris |
44 |
95.238 |
0.419 |
| comEA/celA/cilE | Streptococcus mitis NCTC 12261 |
51.852 |
77.143 |
0.4 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
43.75 |
91.429 |
0.4 |
| comEA/celA/cilE | Streptococcus mitis SK321 |
54.795 |
69.524 |
0.381 |
| comEA | Acinetobacter baylyi ADP1 |
46.914 |
77.143 |
0.362 |