Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PWK10_RS04965 Genome accession   NZ_CP118396
Coordinates   750045..750179 (+) Length   44 a.a.
NCBI ID   WP_274767574.1    Uniprot ID   -
Organism   Caloramator sp. Dgby_cultured_2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 745045..755179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWK10_RS04935 (PWK10_04935) - 745738..746034 (-) 297 WP_274767569.1 hypothetical protein -
  PWK10_RS04940 (PWK10_04940) - 746248..746463 (-) 216 WP_274767570.1 hypothetical protein -
  PWK10_RS04945 (PWK10_04945) - 746454..746699 (-) 246 WP_274767571.1 hypothetical protein -
  PWK10_RS04950 (PWK10_04950) - 746722..747192 (-) 471 WP_274767572.1 hypothetical protein -
  PWK10_RS04955 (PWK10_04955) - 747353..749034 (+) 1682 Protein_991 ATPase, T2SS/T4P/T4SS family -
  PWK10_RS04960 (PWK10_04960) - 749245..749808 (+) 564 WP_274767573.1 type II secretion system F family protein -
  PWK10_RS04965 (PWK10_04965) pilC 750045..750179 (+) 135 WP_274767574.1 type II secretion system F family protein Machinery gene
  PWK10_RS04970 (PWK10_04970) - 750269..750673 (+) 405 WP_274767575.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PWK10_RS04975 (PWK10_04975) - 750721..751230 (+) 510 WP_274767576.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PWK10_RS04980 (PWK10_04980) - 751237..751608 (+) 372 WP_274767578.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PWK10_RS04985 (PWK10_04985) - 751985..752338 (+) 354 WP_274767579.1 hypothetical protein -
  PWK10_RS04990 (PWK10_04990) - 752344..752610 (+) 267 WP_274767580.1 hypothetical protein -
  PWK10_RS04995 (PWK10_04995) - 752708..753262 (+) 555 WP_274767581.1 PilN domain-containing protein -
  PWK10_RS05000 (PWK10_05000) - 753268..753630 (+) 363 WP_274767582.1 hypothetical protein -
  PWK10_RS05005 (PWK10_05005) - 753692..753889 (+) 198 WP_274767583.1 hypothetical protein -
  PWK10_RS05010 (PWK10_05010) - 753976..754251 (+) 276 WP_008908374.1 hypothetical protein -
  PWK10_RS05015 (PWK10_05015) - 754322..754708 (+) 387 WP_274767584.1 hypothetical protein -

Sequence

Protein


Download         Length: 44 a.a.        Molecular weight: 4982.71 Da        Isoelectric Point: 3.8516

>NTDB_id=792370 PWK10_RS04965 WP_274767574.1 750045..750179(+) (pilC) [Caloramator sp. Dgby_cultured_2]
MIKTGEESGTLEEMLTKLADFYENEVENSVARLTAVFEPVMIVF

Nucleotide


Download         Length: 135 bp        

>NTDB_id=792370 PWK10_RS04965 WP_274767574.1 750045..750179(+) (pilC) [Caloramator sp. Dgby_cultured_2]
ATGATAAAAACTGGGGAAGAGAGTGGAACTTTAGAAGAGATGCTTACAAAATTAGCAGATTTTTATGAAAATGAAGTTGA
AAACTCAGTAGCAAGGCTTACTGCAGTCTTTGAACCGGTCATGATAGTTTTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(1-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

59.091

100

0.591
  pilC Pseudomonas stutzeri DSM 10701

57.143

95.455

0.545
  pilC Vibrio cholerae strain A1552

52.273

100

0.523
  pilC Vibrio campbellii strain DS40M4

52.273

100

0.523
  pilC Legionella pneumophila strain ERS1305867

54.762

95.455

0.523
  pilG Neisseria gonorrhoeae MS11

58.974

88.636

0.523
  pilC Acinetobacter baumannii D1279779

52.381

95.455

0.5
  pilG Neisseria meningitidis 44/76-A

56.41

88.636

0.5
  pilC Acinetobacter baylyi ADP1

50

95.455

0.477
  pilC Haemophilus influenzae 86-028NP

37.209

97.727

0.364