Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PUN50_RS12270 | Genome accession | NZ_CP117988 |
| Coordinates | 2667465..2667752 (-) | Length | 95 a.a. |
| NCBI ID | WP_005425566.1 | Uniprot ID | A0A812FIP9 |
| Organism | Vibrio campbellii strain 20220413_1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2662465..2672752
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUN50_RS12245 (PUN50_12245) | - | 2662906..2664120 (+) | 1215 | WP_029788618.1 | pyridoxal phosphate-dependent aminotransferase | - |
| PUN50_RS12250 (PUN50_12250) | yfbR | 2664204..2664788 (+) | 585 | WP_274290466.1 | 5'-deoxynucleotidase | - |
| PUN50_RS12255 (PUN50_12255) | - | 2664792..2666126 (+) | 1335 | WP_274291251.1 | anti-phage deoxyguanosine triphosphatase | - |
| PUN50_RS12260 (PUN50_12260) | - | 2666147..2666764 (-) | 618 | WP_274290467.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| PUN50_RS12265 (PUN50_12265) | rrtA | 2666768..2667319 (+) | 552 | WP_045377767.1 | rhombosortase | - |
| PUN50_RS12270 (PUN50_12270) | comEA | 2667465..2667752 (-) | 288 | WP_005425566.1 | ComEA family DNA-binding protein | Machinery gene |
| PUN50_RS12275 (PUN50_12275) | ppiD | 2667898..2669757 (-) | 1860 | WP_038890556.1 | peptidylprolyl isomerase | - |
| PUN50_RS12280 (PUN50_12280) | - | 2669972..2670244 (-) | 273 | WP_005430934.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 95 a.a. Molecular weight: 10534.24 Da Isoelectric Point: 5.8692
>NTDB_id=788971 PUN50_RS12270 WP_005425566.1 2667465..2667752(-) (comEA) [Vibrio campbellii strain 20220413_1]
MKWMLTLCLLILAPMSWAETKTKADKYEGIEITVNVNSATAEEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVKKNEDRILL
MKWMLTLCLLILAPMSWAETKTKADKYEGIEITVNVNSATAEEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVKKNEDRILL
Nucleotide
Download Length: 288 bp
>NTDB_id=788971 PUN50_RS12270 WP_005425566.1 2667465..2667752(-) (comEA) [Vibrio campbellii strain 20220413_1]
ATGAAATGGATGTTAACGCTGTGCTTATTGATACTCGCGCCGATGAGCTGGGCGGAAACAAAGACTAAAGCAGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCAGAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGTCCATTTAAAACAGCTGCGGATCTTACAAAGGTGAAAGGC
ATCGGTGAGGCGACTGTTAAGAAGAACGAAGACCGCATCCTGCTGTAA
ATGAAATGGATGTTAACGCTGTGCTTATTGATACTCGCGCCGATGAGCTGGGCGGAAACAAAGACTAAAGCAGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCAGAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGTCCATTTAAAACAGCTGCGGATCTTACAAAGGTGAAAGGC
ATCGGTGAGGCGACTGTTAAGAAGAACGAAGACCGCATCCTGCTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
96.842 |
100 |
0.968 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
80 |
100 |
0.8 |
| comEA | Vibrio cholerae C6706 |
58.333 |
100 |
0.589 |
| comEA | Vibrio cholerae strain A1552 |
58.333 |
100 |
0.589 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
39.286 |
100 |
0.463 |
| comE | Neisseria gonorrhoeae MS11 |
39.785 |
97.895 |
0.389 |
| comE | Neisseria gonorrhoeae MS11 |
39.785 |
97.895 |
0.389 |
| comE | Neisseria gonorrhoeae MS11 |
39.785 |
97.895 |
0.389 |
| comE | Neisseria gonorrhoeae MS11 |
39.785 |
97.895 |
0.389 |
| comEA | Acinetobacter baylyi ADP1 |
48.649 |
77.895 |
0.379 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.263 |
0.368 |