Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG328_RS17710 Genome accession   NZ_CP130730
Coordinates   3929358..3929960 (-) Length   200 a.a.
NCBI ID   WP_033285987.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01518     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3924358..3934960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG328_RS17695 (OG328_17675) - 3926097..3927104 (+) 1008 WP_405839988.1 hypothetical protein -
  OG328_RS17700 (OG328_17680) clpX 3927182..3928468 (-) 1287 WP_033285988.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG328_RS17705 (OG328_17685) clpP 3928628..3929308 (-) 681 WP_405839990.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG328_RS17710 (OG328_17690) clpP 3929358..3929960 (-) 603 WP_033285987.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG328_RS17715 (OG328_17695) tig 3930299..3931663 (-) 1365 WP_405839992.1 trigger factor -
  OG328_RS17730 (OG328_17710) - 3932255..3932488 (-) 234 WP_405839994.1 hypothetical protein -
  OG328_RS17735 (OG328_17715) - 3932535..3932729 (-) 195 WP_026151384.1 hypothetical protein -
  OG328_RS17740 (OG328_17720) - 3933033..3934139 (+) 1107 WP_405839997.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21139.05 Da        Isoelectric Point: 4.6747

>NTDB_id=787529 OG328_RS17710 WP_033285987.1 3929358..3929960(-) (clpP) [Streptomyces sp. NBC_01518]
MPTAAGEPSIGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQSIEQ
ITRDSDRDRWFDALEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=787529 OG328_RS17710 WP_033285987.1 3929358..3929960(-) (clpP) [Streptomyces sp. NBC_01518]
ATGCCTACAGCCGCCGGCGAGCCCTCTATCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGTGAGCGGATCAT
CTTCCTCGGTCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTCCTCCTTGCCGCGGACCCCGACA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC
AAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCCATGGGCCAGTTCCTTCTCAGCGCGGGTACCCCGGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTGGCCGGTTCGGCCTCCGACATCAAGA
TCCACGCGGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACGTCCCAGCACACGGGCCAGAGCATCGAGCAG
ATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCGCTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTGATTCC
CACGGCCGCCGGTATGCCGGGCGGCGGCGGTACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.15

93.5

0.525
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

94.5

0.5
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.381

94.5

0.495
  clpP Streptococcus mutans UA159

52.381

94.5

0.495
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

95

0.49
  clpP Streptococcus pyogenes MGAS315

49.735

94.5

0.47
  clpP Streptococcus pyogenes JRS4

49.735

94.5

0.47
  clpP Streptococcus thermophilus LMG 18311

49.206

94.5

0.465
  clpP Streptococcus thermophilus LMD-9

49.206

94.5

0.465
  clpP Streptococcus pneumoniae Rx1

48.677

94.5

0.46
  clpP Streptococcus pneumoniae D39

48.677

94.5

0.46
  clpP Streptococcus pneumoniae R6

48.677

94.5

0.46
  clpP Streptococcus pneumoniae TIGR4

48.677

94.5

0.46