Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG328_RS17705 Genome accession   NZ_CP130730
Coordinates   3928628..3929308 (-) Length   226 a.a.
NCBI ID   WP_405839990.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01518     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3923628..3934308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG328_RS17695 (OG328_17675) - 3926097..3927104 (+) 1008 WP_405839988.1 hypothetical protein -
  OG328_RS17700 (OG328_17680) clpX 3927182..3928468 (-) 1287 WP_033285988.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG328_RS17705 (OG328_17685) clpP 3928628..3929308 (-) 681 WP_405839990.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG328_RS17710 (OG328_17690) clpP 3929358..3929960 (-) 603 WP_033285987.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG328_RS17715 (OG328_17695) tig 3930299..3931663 (-) 1365 WP_405839992.1 trigger factor -
  OG328_RS17730 (OG328_17710) - 3932255..3932488 (-) 234 WP_405839994.1 hypothetical protein -
  OG328_RS17735 (OG328_17715) - 3932535..3932729 (-) 195 WP_026151384.1 hypothetical protein -
  OG328_RS17740 (OG328_17720) - 3933033..3934139 (+) 1107 WP_405839997.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25009.41 Da        Isoelectric Point: 4.5670

>NTDB_id=787528 OG328_RS17705 WP_405839990.1 3928628..3929308(-) (clpP) [Streptomyces sp. NBC_01518]
MNDFPGTGLYDRARAEYTAPAAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPLDKIREDIERDKILTAEDALAYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=787528 OG328_RS17705 WP_405839990.1 3928628..3929308(-) (clpP) [Streptomyces sp. NBC_01518]
GTGAACGACTTCCCCGGCACCGGCCTGTACGACCGCGCACGCGCCGAATACACGGCTCCCGCCGCCGAGTCCCGTTATGT
GATCCCGCGTTTCGTCGAGCGCACCTCGCAGGGCGTCCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGCGACATCTCGATCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACTGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCCGCGTCCGCCGCCGCCGTCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACGGGCCGGGGCCAGGTCTCCGAC
CTCGAGATCGCGGCCAACGAGATCCTCCGCATGCGTGCCCAGCTGGAGGACATGCTGGCCAAGCACTCGACGACCCCGCT
GGACAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

44.724

88.053

0.394
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Streptococcus thermophilus LMG 18311

45.128

86.283

0.389
  clpP Streptococcus thermophilus LMD-9

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376