Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG382_RS26305 Genome accession   NZ_CP130722
Coordinates   5757488..5758168 (+) Length   226 a.a.
NCBI ID   WP_323183850.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01238     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5752488..5763168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG382_RS26275 (OG382_26305) - 5752678..5753832 (-) 1155 WP_266906742.1 acyltransferase family protein -
  OG382_RS26280 (OG382_26310) - 5754312..5754506 (+) 195 WP_266746187.1 hypothetical protein -
  OG382_RS26295 (OG382_26325) tig 5755119..5756534 (+) 1416 WP_266746186.1 trigger factor -
  OG382_RS26300 (OG382_26330) clpP 5756798..5757406 (+) 609 WP_266752174.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG382_RS26305 (OG382_26335) clpP 5757488..5758168 (+) 681 WP_323183850.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG382_RS26310 (OG382_26340) clpX 5758326..5759624 (+) 1299 WP_266746184.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG382_RS26315 (OG382_26345) - 5759705..5760784 (-) 1080 WP_405681700.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24767.18 Da        Isoelectric Point: 4.6883

>NTDB_id=787371 OG382_RS26305 WP_323183850.1 5757488..5758168(+) (clpP) [Streptomyces sp. NBC_01238]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKIRDDIERDKILTAEEALAYGLVDQIVSTRKSAATAA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=787371 OG382_RS26305 WP_323183850.1 5757488..5758168(+) (clpP) [Streptomyces sp. NBC_01238]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGATA
CATTGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCGGGTACGC
CCGGCAAGCGGATGGCGCTGCCCAACGCCCGTATCCTGATCCACCAGCCGTCCTCGCAGACCGGCCGGGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCC
GCTGGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGAAGCCCTCGCCTACGGTCTCGTCGACC
AGATCGTGTCGACCCGCAAGAGCGCGGCCACGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

84.071

0.429
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.206

83.628

0.412
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

84.513

0.385
  clpP Streptococcus thermophilus LMG 18311

44.845

85.841

0.385
  clpP Streptococcus thermophilus LMD-9

44.845

85.841

0.385
  clpP Streptococcus pyogenes JRS4

45.789

84.071

0.385
  clpP Streptococcus pyogenes MGAS315

45.789

84.071

0.385
  clpP Streptococcus pneumoniae Rx1

44.792

84.956

0.381
  clpP Streptococcus pneumoniae D39

44.792

84.956

0.381
  clpP Streptococcus pneumoniae R6

44.792

84.956

0.381
  clpP Streptococcus pneumoniae TIGR4

44.792

84.956

0.381
  clpP Streptococcus mutans UA159

45.263

84.071

0.381
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

84.513

0.381