NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG382_RS26300	Genome accession	NZ_CP130722
Coordinates	5756798..5757406 (+)	Length	202 a.a.
NCBI ID	WP_266752174.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01238
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5751798..5762406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG382_RS26270 (OG382_26300)	-	5752161..5752667 (+)	507	WP_266746189.1	HD domain-containing protein	-
OG382_RS26275 (OG382_26305)	-	5752678..5753832 (-)	1155	WP_266906742.1	acyltransferase family protein	-
OG382_RS26280 (OG382_26310)	-	5754312..5754506 (+)	195	WP_266746187.1	hypothetical protein	-
OG382_RS26295 (OG382_26325)	tig	5755119..5756534 (+)	1416	WP_266746186.1	trigger factor	-
OG382_RS26300 (OG382_26330)	clpP	5756798..5757406 (+)	609	WP_266752174.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG382_RS26305 (OG382_26335)	clpP	5757488..5758168 (+)	681	WP_323183850.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG382_RS26310 (OG382_26340)	clpX	5758326..5759624 (+)	1299	WP_266746184.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG382_RS26315 (OG382_26345)	-	5759705..5760784 (-)	1080	WP_405681700.1	hypothetical protein	-

Sequence

Protein

Download Length: 202 a.a. Molecular weight: 21397.23 Da Isoelectric Point: 4.4463

                                >NTDB_id=787370 OG382_RS26300 WP_266752174.1 5756798..5757406(+) (clpP) [Streptomyces sp. NBC_01238]

MPYSAGEPSPFGGGLGDQVYSRLLGERIIFLGQQVDDEIANKITAQMLLLAADPDKDIYLYINSPGGSVTAGMAVYDTMQ

YIPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGIGGTASDIKIQAQYLLRTKQRMAEITARHSGQTV

ETIIRDGDRDRWYTAEEAKEYGLIDEIITVASGVPGGGGTGA

Nucleotide

Download Length: 609 bp

                                >NTDB_id=787370 OG382_RS26300 WP_266752174.1 5756798..5757406(+) (clpP) [Streptomyces sp. NBC_01238]

ATGCCTTACTCCGCCGGAGAGCCGTCCCCCTTCGGTGGAGGCCTCGGTGACCAGGTCTACAGCCGACTGCTCGGCGAGCG

CATCATCTTCCTGGGTCAGCAGGTCGACGACGAGATCGCCAACAAGATCACGGCGCAGATGCTTCTCCTCGCCGCAGATC

CGGACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGGTCTACGACACCATGCAG

TACATCCCGAACGACGTGGTCACCATCGGTATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTGACCGGCGGCACCGC

GGGCAAGCGCTTCGCGCTCCCGAACACCGACATCCTCATGCACCAGGGCTCGGCCGGCATCGGCGGTACGGCCTCGGACA

TCAAGATCCAGGCCCAGTACCTGCTGCGCACCAAGCAGCGGATGGCCGAGATCACCGCCCGCCACTCCGGCCAGACGGTC

GAGACGATCATTCGCGACGGCGACCGCGACCGCTGGTACACCGCGGAGGAGGCCAAGGAATACGGCCTCATCGACGAGAT

CATCACGGTCGCATCGGGCGTTCCGGGCGGCGGCGGCACCGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-189)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	55.814	85.149	0.475
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.971	84.653	0.465
clpP	Lactococcus lactis subsp. cremoris KW2	53.179	85.644	0.455
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.601	85.644	0.45
clpP	Streptococcus mutans UA159	52.023	85.644	0.446
clpP	Streptococcus thermophilus LMG 18311	51.724	86.139	0.446
clpP	Streptococcus thermophilus LMD-9	51.724	86.139	0.446
clpP	Streptococcus pyogenes JRS4	51.445	85.644	0.441
clpP	Streptococcus pyogenes MGAS315	51.445	85.644	0.441
clpP	Streptococcus pneumoniae R6	50.867	85.644	0.436
clpP	Streptococcus pneumoniae TIGR4	50.867	85.644	0.436
clpP	Streptococcus pneumoniae D39	50.867	85.644	0.436
clpP	Streptococcus pneumoniae Rx1	50.867	85.644	0.436

Detailed information NTG0787370