Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PL321_RS10500 Genome accession   NZ_CP117677
Coordinates   1478215..1478424 (+) Length   69 a.a.
NCBI ID   WP_273961983.1    Uniprot ID   -
Organism   Caloramator sp. mosi_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473215..1483424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL321_RS10475 (PL321_10490) - 1473925..1474440 (+) 516 WP_273961979.1 hypothetical protein -
  PL321_RS10480 (PL321_10495) - 1474807..1475034 (+) 228 WP_273961980.1 hypothetical protein -
  PL321_RS10485 (PL321_10500) - 1475034..1475324 (+) 291 WP_273961981.1 hypothetical protein -
  PL321_RS19970 - 1475676..1476061 (+) 386 Protein_2060 hypothetical protein -
  PL321_RS19975 - 1476076..1476414 (+) 339 WP_337961152.1 ATPase, T2SS/T4P/T4SS family -
  PL321_RS19980 pilB 1476426..1477004 (+) 579 WP_337960801.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  PL321_RS10495 (PL321_10510) - 1477329..1478222 (+) 894 WP_273961982.1 type II secretion system F family protein -
  PL321_RS10500 (PL321_10515) pilC 1478215..1478424 (+) 210 WP_273961983.1 type II secretion system F family protein Machinery gene
  PL321_RS10505 (PL321_10520) - 1478471..1478584 (+) 114 Protein_2065 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PL321_RS10510 (PL321_10525) - 1478919..1479425 (+) 507 WP_273961984.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PL321_RS10515 (PL321_10530) - 1479631..1479981 (+) 351 WP_273961985.1 hypothetical protein -
  PL321_RS10520 (PL321_10535) pilM 1479993..1480913 (+) 921 WP_273961986.1 pilus assembly protein PilM -
  PL321_RS10525 (PL321_10540) - 1480929..1481483 (+) 555 WP_273961987.1 PilN domain-containing protein -
  PL321_RS10530 (PL321_10545) - 1481489..1482184 (+) 696 WP_273961988.1 hypothetical protein -
  PL321_RS10535 (PL321_10550) - 1482580..1483281 (+) 702 WP_273961989.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7822.36 Da        Isoelectric Point: 4.0332

>NTDB_id=786899 PL321_RS10500 WP_273961983.1 1478215..1478424(+) (pilC) [Caloramator sp. mosi_1]
MIKTGEESGTLEEMLSKLADLYENEVENMVTRLTAVFEPIMIVFLALIVGFMLASIILPMFKLYGNMNF

Nucleotide


Download         Length: 210 bp        

>NTDB_id=786899 PL321_RS10500 WP_273961983.1 1478215..1478424(+) (pilC) [Caloramator sp. mosi_1]
ATGATTAAGACAGGAGAAGAGAGTGGAACCTTAGAGGAGATGCTCTCTAAACTGGCAGATCTCTATGAAAATGAGGTTGA
GAATATGGTTACAAGACTAACAGCAGTTTTTGAACCTATAATGATTGTATTTTTAGCCCTTATTGTAGGTTTTATGCTGG
CATCAATAATTCTACCAATGTTTAAACTTTACGGAAATATGAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(1-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

51.471

98.551

0.507
  pilG Neisseria gonorrhoeae MS11

52.239

97.101

0.507
  pilG Neisseria meningitidis 44/76-A

49.254

97.101

0.478
  pilC Legionella pneumophila strain ERS1305867

50.794

91.304

0.464
  pilC Pseudomonas stutzeri DSM 10701

49.206

91.304

0.449
  pilC Vibrio campbellii strain DS40M4

47.619

91.304

0.435
  pilC Vibrio cholerae strain A1552

47.619

91.304

0.435
  pilC Acinetobacter baumannii D1279779

44.444

91.304

0.406
  pilC Acinetobacter baylyi ADP1

42.857

91.304

0.391