Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   Q3Y68_RS24625 Genome accession   NZ_CP130681
Coordinates   5507647..5508360 (+) Length   237 a.a.
NCBI ID   WP_102927978.1    Uniprot ID   A0ABW8BH14
Organism   Streptomyces sp. HUAS CX7     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5502647..5513360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y68_RS24595 (Q3Y68_24595) - 5503329..5503544 (+) 216 WP_304380944.1 excisionase family DNA-binding protein -
  Q3Y68_RS24600 (Q3Y68_24600) - 5503628..5504713 (+) 1086 WP_304380945.1 site-specific integrase -
  Q3Y68_RS24615 (Q3Y68_24615) tig 5505257..5506660 (+) 1404 WP_165287537.1 trigger factor -
  Q3Y68_RS24620 (Q3Y68_24620) clpP 5506991..5507596 (+) 606 WP_051005918.1 ATP-dependent Clp protease proteolytic subunit Regulator
  Q3Y68_RS24625 (Q3Y68_24625) clpP 5507647..5508360 (+) 714 WP_102927978.1 ATP-dependent Clp protease proteolytic subunit Regulator
  Q3Y68_RS24630 (Q3Y68_24630) clpX 5508553..5509839 (+) 1287 WP_061444769.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  Q3Y68_RS24635 (Q3Y68_24635) - 5509904..5510887 (-) 984 WP_233646678.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26293.79 Da        Isoelectric Point: 4.6559

>NTDB_id=786570 Q3Y68_RS24625 WP_102927978.1 5507647..5508360(+) (clpP) [Streptomyces sp. HUAS CX7]
MNDFPGSGLYDRMQATQDMRAAASQGRYTGPQAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVM
AQLLCLESMDPDRDISIYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMGLPNARVLIHQP
YSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQIITTRKMDNSSLR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=786570 Q3Y68_RS24625 WP_102927978.1 5507647..5508360(+) (clpP) [Streptomyces sp. HUAS CX7]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCATGCAGGCCACGCAGGACATGCGCGCCGCCGCCTCCCAGGGCCG
CTACACCGGCCCCCAGGCCGAGTCCCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACG
ACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATG
GCGCAGCTGCTGTGCCTGGAGTCGATGGACCCCGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCAC
CGCGCTCACGGCCATCTACGACACGATGCAGTACGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCGG
CCGCCGCCGTCCTGCTGGCCGCCGGCACGCCGGGCAAGCGCATGGGCCTGCCGAACGCCCGCGTGCTGATCCACCAGCCG
TACAGCGAGACCGGCCGCGGCCAGGTCTCCGACCTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGCTCGCAGCTGGA
GGAGATGCTGGCCAAGCACTCCACCACGCCGGTCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCG
AGGACGCGCTGAGCTACGGCCTGATCGACCAGATCATCACCACCCGGAAGATGGACAACTCCTCTCTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(48-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

80.169

0.414
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

79.325

0.397
  clpP Streptococcus mutans UA159

43.902

86.498

0.38
  clpP Streptococcus pyogenes JRS4

44.279

84.81

0.376
  clpP Streptococcus pyogenes MGAS315

44.279

84.81

0.376
  clpP Lactococcus lactis subsp. cremoris KW2

44.059

85.232

0.376
  clpP Streptococcus thermophilus LMG 18311

45.128

82.278

0.371
  clpP Streptococcus thermophilus LMD-9

45.128

82.278

0.371
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.069

85.232

0.367
  clpP Streptococcus pneumoniae Rx1

43.878

82.7

0.363
  clpP Streptococcus pneumoniae D39

43.878

82.7

0.363
  clpP Streptococcus pneumoniae R6

43.878

82.7

0.363
  clpP Streptococcus pneumoniae TIGR4

43.878

82.7

0.363