Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   Q3Y68_RS24620 Genome accession   NZ_CP130681
Coordinates   5506991..5507596 (+) Length   201 a.a.
NCBI ID   WP_051005918.1    Uniprot ID   A0ABW8BH27
Organism   Streptomyces sp. HUAS CX7     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5501991..5512596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y68_RS24595 (Q3Y68_24595) - 5503329..5503544 (+) 216 WP_304380944.1 excisionase family DNA-binding protein -
  Q3Y68_RS24600 (Q3Y68_24600) - 5503628..5504713 (+) 1086 WP_304380945.1 site-specific integrase -
  Q3Y68_RS24615 (Q3Y68_24615) tig 5505257..5506660 (+) 1404 WP_165287537.1 trigger factor -
  Q3Y68_RS24620 (Q3Y68_24620) clpP 5506991..5507596 (+) 606 WP_051005918.1 ATP-dependent Clp protease proteolytic subunit Regulator
  Q3Y68_RS24625 (Q3Y68_24625) clpP 5507647..5508360 (+) 714 WP_102927978.1 ATP-dependent Clp protease proteolytic subunit Regulator
  Q3Y68_RS24630 (Q3Y68_24630) clpX 5508553..5509839 (+) 1287 WP_061444769.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  Q3Y68_RS24635 (Q3Y68_24635) - 5509904..5510887 (-) 984 WP_233646678.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21226.13 Da        Isoelectric Point: 4.6747

>NTDB_id=786569 Q3Y68_RS24620 WP_051005918.1 5506991..5507596(+) (clpP) [Streptomyces sp. HUAS CX7]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSITAGMAIYDTMQF
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVE
QITRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=786569 Q3Y68_RS24620 WP_051005918.1 5506991..5507596(+) (clpP) [Streptomyces sp. HUAS CX7]
ATGCCCTCAGCCGCCGGCGAGCCCTCCATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTGCTCCTTGCCGCCGACCCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGTATGGCGATCTACGACACCATGCAGTTC
ATCAAGAACGACGTGGTGACGATCGCGATGGGTCTCGCGGCCTCCATGGGACAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTCATCCACCAGCCCTCCGCCGGCCTCGCCGGTTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACCTCTCAGCACACCGGCCAGACGGTCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CCCCACGGCCGCCGGCATGCCGGGCGGCGGTGGCACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.064

85.075

0.502
  clpP Lactococcus lactis subsp. cremoris KW2

53.261

91.542

0.488
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.973

92.04

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.717

91.542

0.483
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMG 18311

51.445

86.07

0.443
  clpP Streptococcus thermophilus LMD-9

51.445

86.07

0.443
  clpP Streptococcus pneumoniae Rx1

50.867

86.07

0.438
  clpP Streptococcus pneumoniae D39

50.867

86.07

0.438
  clpP Streptococcus pneumoniae R6

50.867

86.07

0.438
  clpP Streptococcus pneumoniae TIGR4

50.867

86.07

0.438