Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PGW97_RS14355 Genome accession   NZ_CP117517
Coordinates   3161493..3162713 (+) Length   406 a.a.
NCBI ID   WP_273857550.1    Uniprot ID   -
Organism   Photobacterium sp. GSS17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3156493..3167713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW97_RS14335 ampD 3157083..3157646 (-) 564 WP_273857548.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PGW97_RS14340 nadC 3157938..3158825 (+) 888 WP_273859675.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PGW97_RS14345 - 3159296..3159739 (+) 444 WP_217391891.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PGW97_RS14350 pilB 3159739..3161439 (+) 1701 WP_273857549.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PGW97_RS14355 pilC 3161493..3162713 (+) 1221 WP_273857550.1 type II secretion system F family protein Machinery gene
  PGW97_RS14360 pilD 3163012..3163881 (+) 870 WP_273857551.1 A24 family peptidase Machinery gene
  PGW97_RS14365 coaE 3163886..3164500 (+) 615 WP_273857552.1 dephospho-CoA kinase -
  PGW97_RS14370 zapD 3164525..3165262 (+) 738 WP_047886946.1 cell division protein ZapD -
  PGW97_RS14375 yacG 3165271..3165489 (+) 219 WP_047887028.1 DNA gyrase inhibitor YacG -
  PGW97_RS14380 mutT 3165583..3165981 (-) 399 WP_047886947.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44993.86 Da        Isoelectric Point: 10.1749

>NTDB_id=786188 PGW97_RS14355 WP_273857550.1 3161493..3162713(+) (pilC) [Photobacterium sp. GSS17]
MAQAGKIRYYHWRGVNPSGKKLSGVILGFQDQEVRAKLTEQMIQVKKIRHRNPSTFSKLKNQLKPTDVTTITRQLATMIN
AGVPVVQALKLMADSHHKAEARATLTQVSVQVESGSSLARAMRNSSPLFDTFYCDLVSTGEQTGHLGQVFDRIATYREKN
EAMRKKVIKAMIYPSIVTLTAVGVTVMMLLFVIPQFAGIFNSFGAELPWFTRQVIAASDWLVDSGKYLAILMLLGFITLR
YSYQRSAPLRYRWHRSMLKIPVIGEVLLKATVARFARTLATTFSAGIPLLSGLQSAAKTAGNLYIEKAAMEAHSSTASGM
PLHIALRQSDVFPELMLQMTMIGEESGSLDDMLNKMAMFYEDDVDNTVDNLGKILEPLIIIFLGTVVGGLLVAMYMPIFK
LMSVIG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=786188 PGW97_RS14355 WP_273857550.1 3161493..3162713(+) (pilC) [Photobacterium sp. GSS17]
ATGGCGCAAGCCGGAAAAATCCGTTACTACCACTGGCGGGGAGTTAACCCGTCAGGCAAAAAGCTCTCCGGGGTGATCCT
TGGTTTCCAGGATCAGGAAGTCAGGGCCAAGCTCACAGAGCAGATGATCCAGGTAAAAAAAATTCGCCATCGTAACCCGT
CTACGTTCAGTAAACTAAAAAATCAGCTGAAGCCAACCGATGTTACGACCATTACCCGTCAACTGGCGACCATGATCAAC
GCCGGCGTTCCCGTCGTTCAGGCGCTCAAGCTCATGGCCGACAGCCATCACAAAGCAGAAGCACGCGCCACACTGACCCA
GGTATCCGTCCAGGTCGAGTCTGGCTCCTCTCTCGCCCGGGCGATGCGAAACAGCTCCCCACTGTTTGATACCTTCTATT
GCGACCTTGTCAGCACCGGCGAACAAACCGGCCATTTGGGCCAGGTATTTGACCGGATCGCGACCTATCGGGAAAAAAAT
GAAGCCATGCGTAAAAAAGTCATCAAAGCCATGATCTATCCATCCATCGTCACGCTGACAGCCGTCGGCGTAACGGTCAT
GATGCTGCTGTTTGTCATTCCGCAGTTCGCTGGTATTTTCAATAGCTTTGGTGCAGAGTTGCCGTGGTTTACCCGTCAGG
TCATTGCGGCTTCTGACTGGTTGGTTGATTCCGGGAAATACCTGGCCATCCTGATGTTGCTGGGATTTATCACGTTACGT
TACAGCTACCAGCGTTCTGCCCCTTTGCGCTATCGCTGGCACCGCTCTATGCTCAAGATTCCGGTGATTGGCGAGGTATT
ACTGAAAGCCACAGTCGCAAGGTTTGCCCGCACCCTCGCAACCACTTTCAGTGCAGGTATCCCATTGCTCAGCGGGTTAC
AGTCCGCGGCAAAAACTGCCGGTAACCTGTATATCGAAAAAGCCGCGATGGAGGCCCACAGCAGCACAGCTTCAGGCATG
CCTTTGCATATTGCGTTACGCCAGAGCGATGTATTTCCTGAACTCATGCTGCAAATGACGATGATTGGCGAGGAGTCCGG
CTCTCTGGACGATATGCTCAATAAAATGGCGATGTTTTATGAAGATGATGTCGATAATACCGTCGACAACTTGGGAAAAA
TTCTTGAGCCCCTGATCATTATTTTCCTGGGAACGGTTGTTGGCGGATTACTCGTAGCCATGTATATGCCGATATTCAAA
CTGATGAGTGTGATTGGGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

54.5

98.522

0.537
  pilC Vibrio campbellii strain DS40M4

52.109

99.261

0.517
  pilC Pseudomonas stutzeri DSM 10701

43.659

100

0.441
  pilG Neisseria meningitidis 44/76-A

41.975

99.754

0.419
  pilG Neisseria gonorrhoeae MS11

41.379

100

0.414
  pilC Acinetobacter baylyi ADP1

40.199

99.261

0.399
  pilC Acinetobacter baumannii D1279779

39.547

97.783

0.387
  pilC Legionella pneumophila strain ERS1305867

39.196

98.03

0.384