Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PGW97_RS14360 Genome accession   NZ_CP117517
Coordinates   3163012..3163881 (+) Length   289 a.a.
NCBI ID   WP_273857551.1    Uniprot ID   -
Organism   Photobacterium sp. GSS17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3158012..3168881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW97_RS14345 - 3159296..3159739 (+) 444 WP_217391891.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PGW97_RS14350 pilB 3159739..3161439 (+) 1701 WP_273857549.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PGW97_RS14355 pilC 3161493..3162713 (+) 1221 WP_273857550.1 type II secretion system F family protein Machinery gene
  PGW97_RS14360 pilD 3163012..3163881 (+) 870 WP_273857551.1 A24 family peptidase Machinery gene
  PGW97_RS14365 coaE 3163886..3164500 (+) 615 WP_273857552.1 dephospho-CoA kinase -
  PGW97_RS14370 zapD 3164525..3165262 (+) 738 WP_047886946.1 cell division protein ZapD -
  PGW97_RS14375 yacG 3165271..3165489 (+) 219 WP_047887028.1 DNA gyrase inhibitor YacG -
  PGW97_RS14380 mutT 3165583..3165981 (-) 399 WP_047886947.1 8-oxo-dGTP diphosphatase MutT -
  PGW97_RS14385 secA 3166094..3168811 (-) 2718 WP_047886948.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32311.64 Da        Isoelectric Point: 6.6766

>NTDB_id=786189 PGW97_RS14360 WP_273857551.1 3163012..3163881(+) (pilD) [Photobacterium sp. GSS17]
MELLILYPWLFPVFAAVFGLLVGSFLNVVIYRLPIMMERQWKADCAECFPEFGSIQETGPFNLSIPRSRCPHCQHPISMW
ENIPVVSWLLLKGRCKNCQAKISIRYPLVELFTAAIATTVALTLPHSEWALAVIFFSFALIALTFIDIDKMLLPDQITLP
LMWAGLLMALLGFSPVSLTDAVIGAMAGYLSLWSLYWTFKLLTGKEGMGYGDFKLLAALGAWLGWQLLPFVVLLSSLVGA
ICGIILMRVQRSDSQTPFSFGPYLAIAGWIAILWGEPLLNWYLTSYLGM

Nucleotide


Download         Length: 870 bp        

>NTDB_id=786189 PGW97_RS14360 WP_273857551.1 3163012..3163881(+) (pilD) [Photobacterium sp. GSS17]
ATGGAACTGCTGATCCTCTATCCTTGGCTTTTTCCTGTTTTTGCGGCTGTTTTTGGACTGCTTGTCGGCAGTTTCCTGAA
TGTCGTCATTTATCGCCTACCTATCATGATGGAGCGGCAGTGGAAAGCCGACTGCGCCGAGTGTTTTCCGGAATTTGGTT
CTATTCAAGAAACCGGCCCATTCAACCTCAGCATTCCCCGCTCGCGCTGTCCACATTGCCAGCATCCCATCAGCATGTGG
GAAAATATCCCGGTTGTCAGCTGGCTGCTGCTCAAGGGGCGCTGCAAGAATTGCCAGGCAAAAATCAGCATCCGTTACCC
GCTGGTCGAGCTGTTTACTGCCGCCATTGCTACGACAGTGGCGCTGACGCTACCGCACTCTGAATGGGCGCTTGCCGTTA
TCTTTTTCAGCTTTGCATTGATTGCCCTGACGTTTATCGACATTGACAAAATGCTGCTACCGGATCAAATTACGCTGCCG
TTGATGTGGGCTGGCTTGCTGATGGCGCTGCTTGGCTTTTCGCCAGTCAGCCTGACCGATGCCGTCATCGGTGCCATGGC
GGGCTACCTGTCGCTGTGGAGCCTGTACTGGACGTTTAAGCTGCTGACCGGCAAAGAAGGAATGGGCTACGGGGATTTTA
AACTTCTCGCCGCACTGGGAGCCTGGCTTGGCTGGCAACTGCTGCCTTTTGTCGTACTGCTTTCTTCTTTGGTTGGGGCA
ATCTGCGGCATCATTCTGATGCGGGTGCAGCGTTCCGACAGCCAAACACCGTTTTCATTTGGCCCCTATCTGGCGATTGC
AGGCTGGATAGCCATCTTGTGGGGTGAGCCACTGCTCAACTGGTACCTGACTTCATATCTGGGAATGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

64.583

99.654

0.644
  pilD Vibrio campbellii strain DS40M4

61.592

100

0.616
  pilD Neisseria gonorrhoeae MS11

50.523

99.308

0.502
  pilD Acinetobacter baumannii D1279779

50.185

93.772

0.471
  pilD Acinetobacter nosocomialis M2

49.815

93.772

0.467