Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH93_RS03995 Genome accession   NZ_CP117462
Coordinates   887316..888524 (-) Length   402 a.a.
NCBI ID   WP_305376904.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain FP1707     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882316..893524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH93_RS03955 (PSH93_03955) - 883243..883416 (-) 174 WP_034095827.1 DUF3094 family protein -
  PSH93_RS03960 (PSH93_03960) - 883470..884099 (-) 630 WP_017845475.1 DUF1780 domain-containing protein -
  PSH93_RS03965 (PSH93_03965) - 884202..884669 (+) 468 WP_213633070.1 FAD/FMN-containing dehydrogenase -
  PSH93_RS03970 (PSH93_03970) - 884666..885355 (+) 690 WP_305376902.1 energy-coupling factor ABC transporter permease -
  PSH93_RS03975 (PSH93_03975) - 885421..885636 (+) 216 WP_003171680.1 hypothetical protein -
  PSH93_RS03980 (PSH93_03980) yacG 885633..885833 (-) 201 WP_034095831.1 DNA gyrase inhibitor YacG -
  PSH93_RS03985 (PSH93_03985) coaE 885830..886456 (-) 627 WP_305376903.1 dephospho-CoA kinase -
  PSH93_RS03990 (PSH93_03990) pilD 886453..887319 (-) 867 WP_236217993.1 A24 family peptidase Machinery gene
  PSH93_RS03995 (PSH93_03995) pilC 887316..888524 (-) 1209 WP_305376904.1 type II secretion system F family protein Machinery gene
  PSH93_RS04000 (PSH93_04000) - 888728..889141 (+) 414 WP_034095835.1 pilin -
  PSH93_RS04005 (PSH93_04005) - 889177..890577 (+) 1401 WP_305376905.1 O-antigen ligase -
  PSH93_RS04015 (PSH93_04015) - 890848..891153 (+) 306 WP_034095837.1 DUF6388 family protein -
  PSH93_RS04020 (PSH93_04020) nadC 891223..892071 (-) 849 WP_034095838.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43275.83 Da        Isoelectric Point: 10.1879

>NTDB_id=785748 PSH93_RS03995 WP_305376904.1 887316..888524(-) (pilC) [Pseudomonas rhodesiae strain FP1707]
MNNAVTLYTWEGINRKGRKVSGQSTGRSPAVIKAHLRQQGIRPGRVRKSIPRLPGLAAPIKAADITLLTRQLATLLKAGI
PLLQAFDLISEGVEKPPVGELLQSLRQQVAAGTNLTEALRNHPRYFDELYCHLVAAGEQAGALETLLERLAVHREKSEQL
KARIKKAMTYPITVVVVAGLVTGVLLVHVVPQFQSLFAGVDGKLPGFTLAVIALSEFMQHAWWIIVLGLGVGVIGLRQAC
RKSPIFRHWLDAGLLKAPLAGKLLQKSAVARYARTLSTTFAAGVPLVQALDSVAGAAGSAPYKQAIEHMRRDVSTGMPLN
HAMATSGLFPGMAIQMTAIGEESGTLDFMLEKVASHYETEVDNQVDHLTSLMEPLIMVVLGGIVGALVIAMYLPIFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=785748 PSH93_RS03995 WP_305376904.1 887316..888524(-) (pilC) [Pseudomonas rhodesiae strain FP1707]
ATGAACAACGCTGTAACGCTTTACACCTGGGAAGGCATCAACCGCAAAGGCCGCAAGGTGTCCGGCCAAAGCACCGGACG
CAGCCCTGCCGTGATCAAGGCGCACCTGCGCCAACAAGGCATCCGCCCCGGCCGTGTGCGCAAGTCAATCCCACGGCTGC
CAGGCCTGGCCGCGCCGATCAAAGCCGCCGACATAACCTTACTCACCCGCCAGTTGGCCACGTTGCTGAAGGCCGGTATT
CCCCTGCTGCAAGCTTTCGATCTGATCAGCGAAGGTGTCGAGAAGCCGCCTGTGGGTGAACTGCTGCAAAGCCTGAGACA
ACAGGTCGCCGCCGGCACAAATCTGACTGAAGCGTTACGCAATCACCCGCGTTATTTCGATGAGCTGTACTGCCATTTGG
TAGCGGCCGGCGAACAGGCCGGCGCGCTTGAGACGCTGCTGGAGCGCCTGGCGGTTCATCGCGAAAAGAGCGAGCAGCTC
AAAGCCAGGATCAAAAAAGCCATGACCTACCCCATCACGGTCGTAGTCGTGGCCGGGCTGGTCACTGGCGTGCTGCTGGT
GCATGTGGTGCCGCAGTTCCAGAGCCTGTTCGCCGGAGTGGACGGTAAGCTGCCGGGCTTCACCCTCGCAGTTATCGCCC
TGTCGGAGTTCATGCAACATGCCTGGTGGATCATTGTGCTGGGGCTTGGTGTGGGGGTTATTGGGCTGCGTCAGGCATGT
CGAAAATCGCCAATCTTTCGCCATTGGCTGGACGCCGGTTTGTTGAAAGCACCGCTGGCAGGCAAACTGCTGCAAAAATC
GGCCGTGGCTCGCTACGCCCGTACGCTTTCAACCACCTTCGCGGCGGGGGTTCCGCTGGTGCAGGCCCTGGATTCAGTGG
CGGGTGCCGCGGGCTCCGCCCCCTACAAACAGGCAATCGAGCATATGCGTCGCGATGTATCCACAGGTATGCCGTTGAAT
CACGCCATGGCCACCAGTGGTCTGTTTCCAGGGATGGCGATTCAGATGACGGCAATCGGCGAAGAATCAGGCACGCTGGA
TTTCATGCTGGAAAAAGTCGCCAGCCACTACGAAACCGAAGTGGATAACCAGGTCGATCACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTCGTACTGGGAGGCATCGTCGGGGCGTTGGTCATTGCCATGTACTTACCGATCTTCCAACTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.081

98.507

0.572
  pilC Acinetobacter baylyi ADP1

51.01

98.507

0.502
  pilC Acinetobacter baumannii D1279779

50.886

98.259

0.5
  pilC Legionella pneumophila strain ERS1305867

50.38

98.259

0.495
  pilC Vibrio cholerae strain A1552

43.291

98.259

0.425
  pilC Vibrio campbellii strain DS40M4

42.386

98.01

0.415
  pilG Neisseria gonorrhoeae MS11

41.562

98.756

0.41
  pilG Neisseria meningitidis 44/76-A

40.806

98.756

0.403
  pilC Thermus thermophilus HB27

36.591

99.254

0.363