Detailed information NTG0785747

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH93_RS03990
• Genome accession: NZ_CP117462
• Coordinates: 886453..887319 (-)
• Length: 288 a.a.
• NCBI ID: WP_236217993.1
• Uniprot ID: -
• Organism: Pseudomonas rhodesiae strain FP1707
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 881453..892319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH93_RS03950 (PSH93_03950)	-	881884..883182 (-)	1299	WP_034095826.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH93_RS03955 (PSH93_03955)	-	883243..883416 (-)	174	WP_034095827.1	DUF3094 family protein	-
PSH93_RS03960 (PSH93_03960)	-	883470..884099 (-)	630	WP_017845475.1	DUF1780 domain-containing protein	-
PSH93_RS03965 (PSH93_03965)	-	884202..884669 (+)	468	WP_213633070.1	FAD/FMN-containing dehydrogenase	-
PSH93_RS03970 (PSH93_03970)	-	884666..885355 (+)	690	WP_305376902.1	energy-coupling factor ABC transporter permease	-
PSH93_RS03975 (PSH93_03975)	-	885421..885636 (+)	216	WP_003171680.1	hypothetical protein	-
PSH93_RS03980 (PSH93_03980)	yacG	885633..885833 (-)	201	WP_034095831.1	DNA gyrase inhibitor YacG	-
PSH93_RS03985 (PSH93_03985)	coaE	885830..886456 (-)	627	WP_305376903.1	dephospho-CoA kinase	-
PSH93_RS03990 (PSH93_03990)	pilD	886453..887319 (-)	867	WP_236217993.1	A24 family peptidase	Machinery gene
PSH93_RS03995 (PSH93_03995)	pilC	887316..888524 (-)	1209	WP_305376904.1	type II secretion system F family protein	Machinery gene
PSH93_RS04000 (PSH93_04000)	-	888728..889141 (+)	414	WP_034095835.1	pilin	-
PSH93_RS04005 (PSH93_04005)	-	889177..890577 (+)	1401	WP_305376905.1	O-antigen ligase	-
PSH93_RS04015 (PSH93_04015)	-	890848..891153 (+)	306	WP_034095837.1	DUF6388 family protein	-
PSH93_RS04020 (PSH93_04020)	nadC	891223..892071 (-)	849	WP_034095838.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31702.96 Da
• Isoelectric Point: 8.2402

>NTDB_id=785747 PSH93_RS03990 WP_236217993.1 886453..887319(-) (pilD) [Pseudomonas rhodesiae strain FP1707]
MILLLNESPWAFVALASVLGLIVGSFLNVLVWRLPKMLAREWRAQAHEVLGLPADPVGPTYNLMRPNSCCPQCDHGIRPW
ENIPLLSYLILKGRCAHCKARISLRYPFTELACGLLSAIVAWHFGVGWQAGAVLLLTWGLLAMSLIDADHQLLPDVLVLP
LMWLGLIVNSFALLVPLSDAVWGAVAGYMSLWSVFWLFKLITGKDGMGYGDFKLLALLGAWGGWQIVPMTLLMASLVGVF
AGLILMRVRKTQVSTPMPFGPYLAIAGWIALIWGGQITDFYLQSVGFQ

Nucleotide

• Length: 867 bp

>NTDB_id=785747 PSH93_RS03990 WP_236217993.1 886453..887319(-) (pilD) [Pseudomonas rhodesiae strain FP1707]
TTGATCCTGCTGCTGAATGAATCCCCATGGGCCTTTGTCGCCCTGGCTTCGGTGCTGGGGCTGATCGTGGGCAGTTTCCT
CAATGTGCTGGTGTGGCGCCTGCCGAAGATGCTTGCACGGGAGTGGCGTGCCCAGGCCCATGAAGTACTTGGCTTGCCGG
CCGACCCCGTCGGGCCGACCTACAACCTGATGCGCCCAAATTCCTGCTGCCCTCAGTGCGATCATGGGATCCGCCCCTGG
GAAAATATTCCGCTGCTCAGCTATTTGATCCTCAAGGGCCGCTGCGCTCACTGCAAGGCAAGGATCAGCCTGCGCTACCC
ATTCACCGAACTTGCCTGCGGATTGTTGTCGGCGATCGTGGCCTGGCACTTTGGCGTTGGTTGGCAGGCCGGGGCAGTAT
TGCTGCTGACTTGGGGCTTGCTGGCGATGAGCCTGATCGACGCCGACCACCAGTTACTGCCGGATGTGCTGGTACTGCCG
CTTATGTGGCTGGGTCTGATCGTCAACAGCTTTGCACTGCTGGTGCCGTTGTCCGACGCCGTATGGGGAGCGGTGGCCGG
ATACATGAGCCTATGGTCGGTGTTCTGGCTGTTCAAGTTGATCACTGGCAAGGACGGCATGGGCTACGGCGACTTCAAAC
TCCTGGCCCTGCTCGGGGCCTGGGGCGGTTGGCAGATCGTGCCGATGACCCTCTTGATGGCGTCACTGGTTGGGGTATTT
GCCGGGTTGATACTGATGCGCGTGCGCAAGACCCAGGTGTCCACGCCAATGCCATTTGGGCCCTATCTGGCGATTGCCGG
CTGGATTGCATTGATCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.357	98.264	0.524
pilD	Vibrio campbellii strain DS40M4	51.071	97.222	0.497
pilD	Neisseria gonorrhoeae MS11	52.091	91.319	0.476
pilD	Acinetobacter nosocomialis M2	46.52	94.792	0.441
pilD	Acinetobacter baumannii D1279779	46.52	94.792	0.441