Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH69_RS25510 Genome accession   NZ_CP117461
Coordinates   5688880..5690097 (+) Length   405 a.a.
NCBI ID   WP_305410176.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1740     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5683880..5695097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH69_RS25485 (PSH69_25475) - 5685127..5685423 (+) 297 WP_305410172.1 DUF2845 domain-containing protein -
  PSH69_RS25490 (PSH69_25480) - 5685597..5685953 (-) 357 WP_305410173.1 BON domain-containing protein -
  PSH69_RS25495 (PSH69_25485) - 5686236..5686406 (-) 171 Protein_5037 IS110 family transposase -
  PSH69_RS25500 (PSH69_25490) - 5686531..5686950 (-) 420 WP_305410174.1 pilin -
  PSH69_RS25505 (PSH69_25495) pilB 5687177..5688877 (+) 1701 WP_305410175.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSH69_RS25510 (PSH69_25500) pilC 5688880..5690097 (+) 1218 WP_305410176.1 type II secretion system F family protein Machinery gene
  PSH69_RS25515 (PSH69_25505) pilD 5690099..5690971 (+) 873 WP_096479536.1 A24 family peptidase Machinery gene
  PSH69_RS25520 (PSH69_25510) coaE 5690968..5691591 (+) 624 WP_026286732.1 dephospho-CoA kinase -
  PSH69_RS25525 (PSH69_25515) yacG 5691588..5691788 (+) 201 WP_305410177.1 DNA gyrase inhibitor YacG -
  PSH69_RS25530 (PSH69_25520) - 5691798..5692013 (-) 216 WP_007938959.1 hypothetical protein -
  PSH69_RS25535 (PSH69_25525) - 5692077..5692766 (-) 690 WP_305410178.1 energy-coupling factor ABC transporter permease -
  PSH69_RS25540 (PSH69_25530) - 5693096..5694199 (+) 1104 WP_305412872.1 AI-2E family transporter -
  PSH69_RS25545 (PSH69_25535) - 5694222..5694653 (+) 432 WP_305410179.1 potassium channel family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44050.93 Da        Isoelectric Point: 9.9233

>NTDB_id=785732 PSH69_RS25510 WP_305410176.1 5688880..5690097(+) (pilC) [Pseudomonas sp. FP1740]
MAVKAAKISVYAWEGTDRKGAKMTGELTGQNPALIKAQLRKQGINPGKVRKKSASIFSAGKRIKPLDIALFTRQMATMMK
AGVPLLQSFEIIGEGFDNPNMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIIVTGILLVKVVPQFQSVFSGFGAELPAFTVMVIGLSEFMQDWWWMMLGVLGALIFGLR
HAFKNSPGFRDRTDAWLLKLPLVGALMYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRTSGIFPTMAIQMTAIGEESGALDDMLDKVAGFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=785732 PSH69_RS25510 WP_305410176.1 5688880..5690097(+) (pilC) [Pseudomonas sp. FP1740]
ATGGCGGTCAAAGCAGCGAAAATCAGCGTGTATGCCTGGGAAGGCACGGATCGCAAAGGTGCGAAAATGACCGGCGAGCT
GACCGGACAAAATCCCGCGCTGATCAAGGCCCAGTTGCGCAAGCAGGGTATCAACCCGGGCAAGGTACGGAAAAAATCCG
CGTCCATTTTCAGTGCCGGTAAGCGCATCAAACCCTTGGACATTGCCCTGTTTACCCGGCAGATGGCGACCATGATGAAA
GCCGGCGTACCGCTCCTGCAATCGTTCGAGATCATCGGCGAAGGCTTCGATAACCCGAACATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCCGGTAACAGCTTCGCTGCGGCCCTGCGCAAAAAGCCCCAGTATTTCGACGAGCTGTACT
GCAACCTGGTGGACGCCGGCGAGCAGGCCGGCGCCCTGGATACCCTGCTGGAACGGGTGGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGCTGGCCGTGGTGTTTGTCGCAATCATTGTGACCGGCAT
TCTGCTGGTCAAGGTTGTGCCGCAGTTCCAGTCGGTATTCTCGGGGTTCGGCGCCGAACTGCCGGCGTTCACCGTGATGG
TCATCGGCTTGTCGGAGTTCATGCAAGATTGGTGGTGGATGATGCTTGGCGTACTGGGAGCGCTGATCTTCGGCCTGCGC
CACGCCTTCAAGAACTCTCCAGGTTTTCGCGACCGGACGGACGCCTGGTTGCTGAAACTGCCGCTGGTTGGCGCGCTCAT
GTACAAGTCCGCCGTGGCCCGATACGCCCGCACCCTGTCGACGACGTTTGCCGCCGGCGTGCCACTGGTCGAGGCTCTGG
ATTCAGTCGCAGGCGCGACTGGCAACATCGTGTTCAAGCGAGCGGTGCTACGCATCAAGCAGGACGTTTCCACCGGCATG
CAGCTGAATTTTTCCATGCGTACCTCCGGCATCTTTCCGACCATGGCGATCCAGATGACGGCCATTGGCGAAGAGTCCGG
CGCGCTGGACGACATGCTCGACAAGGTCGCGGGTTTCTACGAGGCCGAGGTGGACAACATGGTCGATAACCTGACCAGCC
TGATGGAGCCATTCATCATGGTGGTGCTGGGTGTTATCGTCGGCGGGCTGGTGGTTGCAATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.123

100

0.753
  pilC Acinetobacter baylyi ADP1

61.52

100

0.62
  pilC Acinetobacter baumannii D1279779

60.049

100

0.605
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilG Neisseria gonorrhoeae MS11

43.035

99.259

0.427
  pilG Neisseria meningitidis 44/76-A

42.537

99.259

0.422
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilC Vibrio campbellii strain DS40M4

41.523

100

0.417
  pilC Thermus thermophilus HB27

38.653

99.012

0.383