Detailed information NTG0785649

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PSH90_RS22480
• Genome accession: NZ_CP117458
• Coordinates: 5050755..5051972 (+)
• Length: 405 a.a.
• NCBI ID: WP_252884847.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP1762
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5045755..5056972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH90_RS22460 (PSH90_22450)	-	5047200..5047499 (+)	300	WP_150742242.1	DUF2845 domain-containing protein	-
PSH90_RS22465 (PSH90_22455)	-	5047764..5048117 (-)	354	WP_071173629.1	BON domain-containing protein	-
PSH90_RS22470 (PSH90_22460)	-	5048409..5048825 (-)	417	WP_071173630.1	pilin	-
PSH90_RS22475 (PSH90_22465)	pilB	5049052..5050752 (+)	1701	WP_056790439.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSH90_RS22480 (PSH90_22470)	pilC	5050755..5051972 (+)	1218	WP_252884847.1	type II secretion system F family protein	Machinery gene
PSH90_RS22485 (PSH90_22475)	pilD	5051974..5052846 (+)	873	WP_150742243.1	A24 family peptidase	Machinery gene
PSH90_RS22490 (PSH90_22480)	coaE	5052843..5053466 (+)	624	WP_305381548.1	dephospho-CoA kinase	-
PSH90_RS22495 (PSH90_22485)	yacG	5053463..5053663 (+)	201	WP_016773149.1	DNA gyrase inhibitor YacG	-
PSH90_RS22500 (PSH90_22490)	-	5053671..5053886 (-)	216	WP_016773148.1	hypothetical protein	-
PSH90_RS22505 (PSH90_22495)	-	5053952..5054641 (-)	690	WP_041477814.1	energy-coupling factor ABC transporter permease	-
PSH90_RS22510 (PSH90_22500)	-	5054832..5055458 (+)	627	WP_007909887.1	DUF1780 domain-containing protein	-
PSH90_RS22515 (PSH90_22505)	-	5055455..5055982 (+)	528	WP_160768590.1	MOSC domain-containing protein	-
PSH90_RS22520 (PSH90_22510)	-	5056034..5056207 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44071.77 Da
• Isoelectric Point: 10.1214

>NTDB_id=785649 PSH90_RS22480 WP_252884847.1 5050755..5051972(+) (pilC) [Pseudomonas sp. FP1762]
MAVKAAKVSVYAWEGTDRKGSKVSGELSGQNPALIKAQLRKQGINPGKVRKKSASLLTFGKRIKPQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFATALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPGFTLMIISLSEFMQQWWWAILFALVAVFFGTR
HALKTSQALRDRRDAWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRVRQDVSTGM
QLNFSMRSTGVFPNMAVQMTAIGEESGALDDMLDKVAGFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide

• Length: 1218 bp

>NTDB_id=785649 PSH90_RS22480 WP_252884847.1 5050755..5051972(+) (pilC) [Pseudomonas sp. FP1762]
ATGGCGGTCAAGGCAGCGAAAGTCAGCGTTTACGCCTGGGAAGGCACCGACCGCAAAGGCAGTAAAGTCAGCGGCGAGTT
GAGCGGACAGAACCCCGCACTGATCAAGGCGCAACTGCGCAAACAGGGGATCAACCCGGGCAAGGTGCGCAAGAAATCCG
CGTCCCTGCTGACCTTCGGCAAACGCATCAAACCGCAGGACATCGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCGCTGTTGCAGTCCTTCGACATCATCGGCGAAGGCTTCGAAAACCCGGCCATGCGCAAACTGGTCGACGA
GGTCAAACAGGAGGTCGCGGCCGGTAACAGCTTCGCTACGGCCCTGCGCAAGAAACCGCAATACTTCGACGAGTTGTACT
GCAATCTGGTCGACGCCGGCGAACAGTCTGGCGCCCTCGACACCTTGCTTGAACGGGTCGCGACCTATAAGGAAAAAAGC
GAAGCGCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCCACCGCCGTGGTGCTGGTGGCGGCAGTGGTAACAGGCAT
TCTGCTGGTCAAAGTGGTGCCGCAGTTCCAGTCGGTATTCTCCGGGTTCGGCGCCGAATTGCCGGGCTTTACCCTGATGA
TCATCAGCCTGTCGGAGTTCATGCAGCAGTGGTGGTGGGCGATTCTTTTTGCGCTGGTGGCGGTGTTTTTCGGCACTCGC
CACGCGTTGAAGACTTCGCAGGCCCTGCGCGACCGGCGCGATGCCTGGCTGCTGAAGCTGCCACTGGTGGGCACCTTGAT
GTACAAGTCCGCCGTCGCCCGCTTTGCCCGCACCCTGTCGACCACTTTCGCAGCCGGCGTGCCGCTGGTGGAAGCACTGG
ATTCGGTCGCCGGTGCCACCGGCAATGTGGTGTTCAAGCGCGCGGTGTTGCGCGTGCGGCAGGACGTCTCGACCGGCATG
CAACTGAATTTCTCCATGCGCAGCACCGGTGTGTTTCCCAACATGGCGGTGCAGATGACCGCCATCGGCGAGGAATCGGG
CGCGCTGGATGACATGCTCGACAAGGTCGCCGGTTTTTATGAAGCGGAAGTCGATAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGGGTCATCGTCGGTGGACTGGTGGTGGCCATGTACCTGCCGATCTTCCAG
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (275-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	73.827	100	0.738
pilC	Acinetobacter baumannii D1279779	58.824	100	0.593
pilC	Acinetobacter baylyi ADP1	58.578	100	0.59
pilC	Legionella pneumophila strain ERS1305867	53	98.765	0.523
pilC	Vibrio cholerae strain A1552	44.444	97.778	0.435
pilG	Neisseria gonorrhoeae MS11	43.176	99.506	0.43
pilG	Neisseria meningitidis 44/76-A	42.432	99.506	0.422
pilC	Vibrio campbellii strain DS40M4	41.872	100	0.42
pilC	Thermus thermophilus HB27	39.599	98.519	0.39