Detailed information NTG0785650

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH90_RS22485
• Genome accession: NZ_CP117458
• Coordinates: 5051974..5052846 (+)
• Length: 290 a.a.
• NCBI ID: WP_150742243.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP1762
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5046974..5057846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH90_RS22460 (PSH90_22450)	-	5047200..5047499 (+)	300	WP_150742242.1	DUF2845 domain-containing protein	-
PSH90_RS22465 (PSH90_22455)	-	5047764..5048117 (-)	354	WP_071173629.1	BON domain-containing protein	-
PSH90_RS22470 (PSH90_22460)	-	5048409..5048825 (-)	417	WP_071173630.1	pilin	-
PSH90_RS22475 (PSH90_22465)	pilB	5049052..5050752 (+)	1701	WP_056790439.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSH90_RS22480 (PSH90_22470)	pilC	5050755..5051972 (+)	1218	WP_252884847.1	type II secretion system F family protein	Machinery gene
PSH90_RS22485 (PSH90_22475)	pilD	5051974..5052846 (+)	873	WP_150742243.1	A24 family peptidase	Machinery gene
PSH90_RS22490 (PSH90_22480)	coaE	5052843..5053466 (+)	624	WP_305381548.1	dephospho-CoA kinase	-
PSH90_RS22495 (PSH90_22485)	yacG	5053463..5053663 (+)	201	WP_016773149.1	DNA gyrase inhibitor YacG	-
PSH90_RS22500 (PSH90_22490)	-	5053671..5053886 (-)	216	WP_016773148.1	hypothetical protein	-
PSH90_RS22505 (PSH90_22495)	-	5053952..5054641 (-)	690	WP_041477814.1	energy-coupling factor ABC transporter permease	-
PSH90_RS22510 (PSH90_22500)	-	5054832..5055458 (+)	627	WP_007909887.1	DUF1780 domain-containing protein	-
PSH90_RS22515 (PSH90_22505)	-	5055455..5055982 (+)	528	WP_160768590.1	MOSC domain-containing protein	-
PSH90_RS22520 (PSH90_22510)	-	5056034..5056207 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
PSH90_RS22525 (PSH90_22515)	-	5056271..5057569 (+)	1299	WP_016773144.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31884.05 Da
• Isoelectric Point: 7.3655

>NTDB_id=785650 PSH90_RS22485 WP_150742243.1 5051974..5052846(+) (pilD) [Pseudomonas sp. FP1762]
MSIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
ATLGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=785650 PSH90_RS22485 WP_150742243.1 5051974..5052846(+) (pilD) [Pseudomonas sp. FP1762]
ATGTCTATCGATGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGCTTGCCGAAAATGCTTGAGCGCGACTGGCGCCAGCAGGCTCATGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGGCGCTGCTCGGCTTGTTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATTTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATCGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGG
GCGACATTGGGCGTTGTCATGCTGCGTCTGCGTGCCCAGGAAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.521	97.931	0.524
pilD	Vibrio campbellii strain DS40M4	52.632	98.276	0.517
pilD	Neisseria gonorrhoeae MS11	46.69	98.966	0.462
pilD	Acinetobacter baumannii D1279779	46.35	94.483	0.438
pilD	Acinetobacter nosocomialis M2	46.35	94.483	0.438