Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH76_RS23595 Genome accession   NZ_CP117447
Coordinates   5217336..5218544 (+) Length   402 a.a.
NCBI ID   WP_305493011.1    Uniprot ID   A0AAJ6HCC9
Organism   Pseudomonas sp. FP215     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5212336..5223544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH76_RS23570 (PSH76_23560) - 5212765..5214912 (-) 2148 WP_305493010.1 DUF1631 domain-containing protein -
  PSH76_RS23575 (PSH76_23565) nadC 5215158..5216006 (+) 849 WP_098949594.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PSH76_RS23580 (PSH76_23570) - 5216126..5216431 (-) 306 WP_032893620.1 DUF6388 family protein -
  PSH76_RS23590 (PSH76_23580) - 5216721..5217134 (-) 414 WP_138761279.1 pilin -
  PSH76_RS23595 (PSH76_23585) pilC 5217336..5218544 (+) 1209 WP_305493011.1 type II secretion system F family protein Machinery gene
  PSH76_RS23600 (PSH76_23590) pilD 5218541..5219407 (+) 867 WP_032893623.1 A24 family peptidase Machinery gene
  PSH76_RS23605 (PSH76_23595) coaE 5219404..5220027 (+) 624 WP_032893625.1 dephospho-CoA kinase -
  PSH76_RS23610 (PSH76_23600) yacG 5220024..5220224 (+) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  PSH76_RS23615 (PSH76_23605) - 5220221..5220436 (-) 216 WP_003171680.1 hypothetical protein -
  PSH76_RS23620 (PSH76_23610) - 5220501..5221190 (-) 690 WP_138761276.1 energy-coupling factor ABC transporter permease -
  PSH76_RS23625 (PSH76_23615) - 5221318..5221947 (+) 630 WP_003188431.1 DUF1780 domain-containing protein -
  PSH76_RS23630 (PSH76_23620) - 5222002..5222175 (+) 174 WP_032893628.1 DUF3094 family protein -
  PSH76_RS23635 (PSH76_23625) - 5222236..5223534 (+) 1299 WP_014716868.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43470.03 Da        Isoelectric Point: 10.2936

>NTDB_id=785342 PSH76_RS23595 WP_305493011.1 5217336..5218544(+) (pilC) [Pseudomonas sp. FP215]
MNDTPTIYAWEGINRKGRRVSGQIAGHNLALIKVQLRQQGICPERVRKKSCALPTFKTRITPADIALFTRQLATLLKAGI
PLLQAFDIISEGVENPQLRELVKALKQHIASGHPLVAALRQYPRHFDELYCNLVAAGEMAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPIAVLVIATGVSTVLLIHVVPQFQNLFAGVNGQLPGFTLGVIALSELLQQAWWMLGLGVGAALGAGRHAY
RTHPGFRHGWAAGLLKVPVAGKLLHKSAVARYARTLSTTFAAGVPLVQALGSVAGAVGHGPFKQAIERMRHDVSTGMQLN
QSMHNSGLFPGMAIQMTAIGEESGTLDRMLEKVANHYESDVDTLVDNLTSLMEPLIMVVLGGIVGALVVAMYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=785342 PSH76_RS23595 WP_305493011.1 5217336..5218544(+) (pilC) [Pseudomonas sp. FP215]
ATGAACGACACTCCAACAATCTATGCCTGGGAGGGCATCAACCGCAAAGGGCGCCGGGTCTCCGGGCAAATCGCCGGCCA
TAACCTTGCGCTGATCAAGGTACAACTGCGCCAGCAAGGGATCTGCCCCGAGCGTGTGCGCAAAAAATCTTGTGCACTGC
CGACCTTCAAGACGCGCATAACGCCCGCAGATATCGCCCTGTTCACTCGCCAGTTGGCCACCTTGCTCAAGGCCGGCATT
CCGCTGCTGCAAGCCTTCGACATCATCAGTGAAGGCGTCGAAAACCCACAGCTGCGCGAACTGGTGAAGGCGCTGAAACA
GCATATTGCCAGCGGCCACCCGTTGGTTGCTGCCCTGCGTCAGTATCCCCGCCACTTCGATGAGCTGTACTGCAATCTGG
TGGCGGCTGGCGAAATGGCCGGTGCCCTGGAAACCCTACTGGAGCGCGTGGCGATTCATCTGGAAAAAAGCCAACGGCTC
AAAACCAGGATCAAGAAAGCCATGACCTACCCTATCGCGGTACTGGTAATTGCCACAGGGGTGAGCACAGTGCTGTTGAT
CCATGTGGTGCCGCAATTCCAGAACTTGTTCGCCGGGGTCAACGGCCAATTGCCGGGGTTTACCCTGGGGGTCATCGCGC
TGTCGGAACTGCTGCAACAGGCGTGGTGGATGCTGGGGCTGGGTGTGGGCGCGGCGCTGGGCGCGGGTCGCCACGCCTAC
CGGACTCACCCGGGGTTTCGCCATGGGTGGGCAGCAGGTTTGTTGAAAGTGCCCGTGGCAGGCAAACTGCTGCACAAATC
TGCGGTCGCCCGCTACGCACGCACGCTATCCACTACCTTTGCGGCGGGCGTTCCTCTGGTACAGGCATTGGGTTCGGTGG
CTGGCGCCGTCGGTCATGGCCCCTTTAAACAGGCAATCGAACGTATGCGCCACGATGTATCCACAGGCATGCAGTTGAAT
CAATCGATGCATAACAGCGGCCTGTTCCCAGGCATGGCAATCCAGATGACCGCAATCGGTGAGGAGTCCGGCACCCTGGA
CCGCATGCTGGAAAAAGTCGCGAACCACTACGAGTCAGACGTGGATACCTTGGTCGACAATCTCACCAGCCTGATGGAGC
CGCTGATCATGGTGGTATTGGGGGGGATTGTCGGCGCGCTGGTAGTCGCCATGTACTTGCCGGTATTCCAATTGGGGACG
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.431

98.756

0.567
  pilC Acinetobacter baumannii D1279779

50.503

99.005

0.5
  pilC Acinetobacter baylyi ADP1

50.253

98.507

0.495
  pilC Legionella pneumophila strain ERS1305867

47.761

100

0.478
  pilC Vibrio cholerae strain A1552

39.949

97.761

0.391
  pilC Thermus thermophilus HB27

38.155

99.751

0.381
  pilG Neisseria gonorrhoeae MS11

39.791

95.025

0.378
  pilG Neisseria meningitidis 44/76-A

39.267

95.025

0.373
  pilC Vibrio campbellii strain DS40M4

38.265

97.512

0.373