Detailed information NTG0785343

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH76_RS23600
• Genome accession: NZ_CP117447
• Coordinates: 5218541..5219407 (+)
• Length: 288 a.a.
• NCBI ID: WP_032893623.1
• Uniprot ID: A0AAJ6H9G0
• Organism: Pseudomonas sp. FP215
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5213541..5224407

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH76_RS23575 (PSH76_23565)	nadC	5215158..5216006 (+)	849	WP_098949594.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PSH76_RS23580 (PSH76_23570)	-	5216126..5216431 (-)	306	WP_032893620.1	DUF6388 family protein	-
PSH76_RS23590 (PSH76_23580)	-	5216721..5217134 (-)	414	WP_138761279.1	pilin	-
PSH76_RS23595 (PSH76_23585)	pilC	5217336..5218544 (+)	1209	WP_305493011.1	type II secretion system F family protein	Machinery gene
PSH76_RS23600 (PSH76_23590)	pilD	5218541..5219407 (+)	867	WP_032893623.1	A24 family peptidase	Machinery gene
PSH76_RS23605 (PSH76_23595)	coaE	5219404..5220027 (+)	624	WP_032893625.1	dephospho-CoA kinase	-
PSH76_RS23610 (PSH76_23600)	yacG	5220024..5220224 (+)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
PSH76_RS23615 (PSH76_23605)	-	5220221..5220436 (-)	216	WP_003171680.1	hypothetical protein	-
PSH76_RS23620 (PSH76_23610)	-	5220501..5221190 (-)	690	WP_138761276.1	energy-coupling factor ABC transporter permease	-
PSH76_RS23625 (PSH76_23615)	-	5221318..5221947 (+)	630	WP_003188431.1	DUF1780 domain-containing protein	-
PSH76_RS23630 (PSH76_23620)	-	5222002..5222175 (+)	174	WP_032893628.1	DUF3094 family protein	-
PSH76_RS23635 (PSH76_23625)	-	5222236..5223534 (+)	1299	WP_014716868.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31816.98 Da
• Isoelectric Point: 6.8836

>NTDB_id=785343 PSH76_RS23600 WP_032893623.1 5218541..5219407(+) (pilD) [Pseudomonas sp. FP215]
MSLLLSEHPWAFVGLALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILDLPAEPDGPAYNLMRPNSCCPHCNQPIRPW
ENIPVLSYLLLRGHCAHCREPIGLRYPLTELACALISTAVAWHFGFGWQAGAVMLLSWGLLGMSLIDLDHQLLPDVLVLP
LLWLGLILNSADLLTPLPDAVWGAVIGYMSLWSLFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
AGLILLRLRKAQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785343 PSH76_RS23600 WP_032893623.1 5218541..5219407(+) (pilD) [Pseudomonas sp. FP215]
TTGAGCCTGTTGCTGAGCGAACATCCCTGGGCGTTTGTAGGCCTGGCGCTGGTGTTGGGCCTGATCGTCGGCAGCTTCCT
CAATGTTCTGGTGTGGCGCCTGCCCAAAATGCTCGAGCGGGAGTGGCGTGCCCAGGCCCATGAGATTCTCGACTTGCCAG
CCGAGCCCGATGGACCGGCCTATAACCTGATGCGCCCCAACTCATGCTGCCCGCACTGCAATCAACCGATTCGGCCTTGG
GAAAATATCCCGGTGCTCAGCTACCTGCTGCTCCGGGGGCATTGTGCCCACTGCCGCGAACCCATCGGCCTGCGTTACCC
CCTCACCGAACTGGCCTGCGCGCTGATCTCAACCGCTGTCGCCTGGCACTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGCTGTTGAGTTGGGGCTTGCTGGGGATGAGCCTGATTGATCTGGACCACCAACTGCTGCCGGATGTGCTGGTGCTGCCG
CTGCTATGGCTGGGGCTGATCCTCAACAGCGCTGACCTGCTGACGCCCCTGCCCGATGCAGTATGGGGCGCGGTCATCGG
CTACATGAGCTTGTGGAGCCTGTTCTGGCTCTTCAAGCTGGCCACTGGCAAGGACGGCATGGGCCATGGCGACTTCAAAT
TATTGGCCTTGCTGGGAGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGATGGCCTCGCTGCTGGGCGTGTTT
GCCGGGTTGATTCTGTTGCGTTTGCGTAAGGCCCAGGTGTCAGCGCCGATGCCGTTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.357	98.264	0.524
pilD	Vibrio campbellii strain DS40M4	50.352	98.611	0.497
pilD	Neisseria gonorrhoeae MS11	50	93.75	0.469
pilD	Acinetobacter baumannii D1279779	48.352	94.792	0.458
pilD	Acinetobacter nosocomialis M2	47.619	94.792	0.451