Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH62_RS04075 Genome accession   NZ_CP117442
Coordinates   935943..937151 (-) Length   402 a.a.
NCBI ID   WP_305465838.1    Uniprot ID   -
Organism   Pseudomonas tolaasii strain FP2293     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 930943..942151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH62_RS04040 (PSH62_04040) - 932266..932439 (-) 174 WP_016971625.1 DUF3094 family protein -
  PSH62_RS04045 (PSH62_04045) - 932529..933158 (-) 630 WP_016971624.1 DUF1780 domain-containing protein -
  PSH62_RS04050 (PSH62_04050) - 933287..933976 (+) 690 WP_016971623.1 energy-coupling factor ABC transporter permease -
  PSH62_RS04055 (PSH62_04055) - 934051..934266 (+) 216 WP_016971622.1 hypothetical protein -
  PSH62_RS04060 (PSH62_04060) yacG 934263..934463 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  PSH62_RS04065 (PSH62_04065) coaE 934460..935083 (-) 624 WP_016971621.1 dephospho-CoA kinase -
  PSH62_RS04070 (PSH62_04070) pilD 935080..935946 (-) 867 WP_305465837.1 A24 family peptidase Machinery gene
  PSH62_RS04075 (PSH62_04075) pilC 935943..937151 (-) 1209 WP_305465838.1 type II secretion system F family protein Machinery gene
  PSH62_RS04080 (PSH62_04080) - 937355..937768 (+) 414 WP_026082918.1 pilin -
  PSH62_RS04090 (PSH62_04090) - 938069..938374 (+) 306 WP_016971617.1 DUF6388 family protein -
  PSH62_RS04095 (PSH62_04095) nadC 938416..939264 (-) 849 WP_016971616.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PSH62_RS04100 (PSH62_04100) - 939510..941666 (+) 2157 WP_305465839.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43607.23 Da        Isoelectric Point: 10.3656

>NTDB_id=785205 PSH62_RS04075 WP_305465838.1 935943..937151(-) (pilC) [Pseudomonas tolaasii strain FP2293]
MNEASTIYAWEGINRKGRRVAGQTAGQSLALIKAQLRQQGICPGRVHKKALPLPRFAPPIKPADIALFTRQLATLLRAGI
PLLQAFDIIREGVDHRLLRELIQNLKQEIASGNNLSAALRKHPRHFDELYCNLIAAGEQAGALETLLERVAIHLEKSQRL
KARIKKAMTYPAAVIVVAGVVSTVLLIHVVPQFQSLFAGVDSKLPRFTLSVIALSEFLQRAWWMIALGLGGGLFGVRQAF
HYSRDLRLRVDAGLLIVPLAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAGATGNGMFKQAIERMRHDVSTGMQLH
QSMAATGLFPGMAIQMTAIGEESGTLDSMLEKVANHYEADVDNLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=785205 PSH62_RS04075 WP_305465838.1 935943..937151(-) (pilC) [Pseudomonas tolaasii strain FP2293]
ATGAATGAAGCTTCAACGATTTACGCCTGGGAAGGCATCAACCGCAAAGGCCGCAGGGTGGCTGGGCAAACGGCTGGGCA
AAGCCTTGCCCTGATCAAGGCACAATTGCGCCAGCAAGGTATCTGCCCCGGCCGCGTGCACAAGAAAGCCTTGCCCTTGC
CAAGGTTCGCCCCACCGATAAAACCTGCCGACATTGCGCTGTTCACCCGCCAGTTGGCGACCTTGTTGCGCGCCGGCATC
CCGCTGTTGCAGGCCTTCGACATCATCCGTGAAGGGGTTGACCACCGCCTGCTGCGGGAGCTGATACAAAACCTGAAACA
GGAAATCGCCAGCGGCAACAACCTGTCGGCGGCGCTGCGTAAACACCCGCGCCATTTCGATGAGCTTTATTGCAACCTGA
TCGCCGCCGGTGAACAGGCCGGAGCCCTGGAAACCCTGCTGGAGCGGGTAGCGATTCACCTGGAAAAAAGCCAGCGGCTC
AAGGCTCGCATCAAAAAGGCCATGACCTACCCCGCGGCCGTCATCGTGGTGGCTGGCGTGGTCAGCACGGTGCTGCTGAT
TCATGTGGTGCCGCAGTTCCAGAGCCTGTTTGCCGGGGTCGACAGCAAGCTGCCGAGGTTCACGCTGAGCGTCATTGCCC
TGTCCGAATTCCTGCAGCGAGCCTGGTGGATGATTGCACTGGGCCTGGGCGGCGGGTTGTTTGGGGTCCGACAGGCTTTT
CACTACTCCCGGGATTTACGTCTTCGGGTGGACGCCGGTTTGTTGATCGTGCCCCTGGCAGGCACACTGCTGAAAAAATC
CGCCGTCGCCCGTTACGCTCGCACCCTCTCGACGACCTTTGCGGCAGGTGTGCCTTTGGTGCAGGCTCTGGATTCCGTGG
CGGGCGCGACGGGCAATGGAATGTTCAAACAGGCGATCGAACGTATGCGTCACGATGTATCCACCGGCATGCAGTTGCAT
CAGTCCATGGCCGCCACGGGCTTGTTTCCCGGCATGGCGATCCAGATGACGGCGATTGGAGAAGAATCCGGCACTCTGGA
TAGCATGCTGGAGAAGGTTGCCAATCACTACGAGGCGGATGTGGATAACCTGGTCGACAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTGGTATTGGGCGGCATTGTCGGCGCACTGGTTATCGCCATGTACCTGCCGGTTTTTCAGCTGGGTTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.081

98.507

0.572
  pilC Acinetobacter baylyi ADP1

50.253

98.507

0.495
  pilC Legionella pneumophila strain ERS1305867

50.38

98.259

0.495
  pilC Acinetobacter baumannii D1279779

49.62

98.259

0.488
  pilC Vibrio cholerae strain A1552

39.899

98.507

0.393
  pilG Neisseria gonorrhoeae MS11

41.207

94.776

0.391
  pilG Neisseria meningitidis 44/76-A

40.682

94.776

0.386
  pilC Vibrio campbellii strain DS40M4

38.579

98.01

0.378
  pilC Thermus thermophilus HB27

36.908

99.751

0.368