Detailed information NTG0785204

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH62_RS04070
• Genome accession: NZ_CP117442
• Coordinates: 935080..935946 (-)
• Length: 288 a.a.
• NCBI ID: WP_305465837.1
• Uniprot ID: -
• Organism: Pseudomonas tolaasii strain FP2293
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 930080..940946

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH62_RS04035 (PSH62_04035)	-	930907..932205 (-)	1299	WP_016971626.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH62_RS04040 (PSH62_04040)	-	932266..932439 (-)	174	WP_016971625.1	DUF3094 family protein	-
PSH62_RS04045 (PSH62_04045)	-	932529..933158 (-)	630	WP_016971624.1	DUF1780 domain-containing protein	-
PSH62_RS04050 (PSH62_04050)	-	933287..933976 (+)	690	WP_016971623.1	energy-coupling factor ABC transporter permease	-
PSH62_RS04055 (PSH62_04055)	-	934051..934266 (+)	216	WP_016971622.1	hypothetical protein	-
PSH62_RS04060 (PSH62_04060)	yacG	934263..934463 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
PSH62_RS04065 (PSH62_04065)	coaE	934460..935083 (-)	624	WP_016971621.1	dephospho-CoA kinase	-
PSH62_RS04070 (PSH62_04070)	pilD	935080..935946 (-)	867	WP_305465837.1	A24 family peptidase	Machinery gene
PSH62_RS04075 (PSH62_04075)	pilC	935943..937151 (-)	1209	WP_305465838.1	type II secretion system F family protein	Machinery gene
PSH62_RS04080 (PSH62_04080)	-	937355..937768 (+)	414	WP_026082918.1	pilin	-
PSH62_RS04090 (PSH62_04090)	-	938069..938374 (+)	306	WP_016971617.1	DUF6388 family protein	-
PSH62_RS04095 (PSH62_04095)	nadC	938416..939264 (-)	849	WP_016971616.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31662.96 Da
• Isoelectric Point: 7.5382

>NTDB_id=785204 PSH62_RS04070 WP_305465837.1 935080..935946(-) (pilD) [Pseudomonas tolaasii strain FP2293]
MSGLLVERPWLFVAMALVLGLIVGSFLNVLVWRLPKMLEREWRAQAQEILGLPADPEGPVYNLARPNSCCPHCSQPIRPW
ENIPLLSYLMLRGRCAHCREPISARYPFTELACALISATVAWHFGFGCEAGAVLLLSWGLLAMSLIDVDHQLLPDVLVLP
MLWLGLVLNGFGLLAALPDALWGAVIGYMSLWSVFWVFKMVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVC
AGLILLRLRKPQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785204 PSH62_RS04070 WP_305465837.1 935080..935946(-) (pilD) [Pseudomonas tolaasii strain FP2293]
TTGAGCGGGCTGCTGGTTGAGCGACCGTGGCTGTTCGTCGCAATGGCGCTGGTACTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTGGAACGCGAGTGGCGGGCTCAGGCCCAGGAAATCCTGGGTTTGCCGG
CGGATCCGGAAGGCCCCGTTTACAACCTTGCGCGGCCCAATTCATGTTGCCCGCATTGCAGCCAGCCCATTCGCCCCTGG
GAAAACATCCCGCTGCTCAGTTACCTGATGCTCAGGGGGCGTTGTGCTCATTGCCGTGAACCGATCAGCGCCCGCTACCC
TTTCACGGAACTGGCCTGCGCGCTGATTTCGGCAACCGTCGCGTGGCATTTCGGCTTCGGTTGCGAAGCGGGCGCGGTAC
TGCTGCTGAGCTGGGGCTTGCTGGCGATGAGCCTGATCGACGTCGACCATCAACTGCTGCCGGACGTACTGGTGCTGCCA
ATGTTATGGCTGGGGCTGGTCCTTAACGGTTTCGGTTTGCTGGCAGCGCTGCCTGATGCGCTGTGGGGCGCGGTCATAGG
CTATATGAGCCTGTGGTCGGTGTTCTGGGTGTTCAAGATGGTCACCGGGAAAGACGGCATGGGGCATGGCGACTTCAAGT
TACTGGCGCTGCTCGGCGCCTGGGGGGGCTGGCAGATTTTGCCGATGACGCTGCTGATGGCCTCGTTGCTGGGCGTGTGC
GCGGGCCTTATCCTGCTGCGCTTGCGCAAGCCACAGGTATCGGCACCGATGCCATTCGGGCCGTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.448	97.569	0.531
pilD	Vibrio campbellii strain DS40M4	49.821	96.875	0.483
pilD	Acinetobacter nosocomialis M2	48.736	96.181	0.469
pilD	Acinetobacter baumannii D1279779	48.736	96.181	0.469
pilD	Neisseria gonorrhoeae MS11	48.148	93.75	0.451