Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH59_RS03925 Genome accession   NZ_CP117439
Coordinates   881403..882611 (-) Length   402 a.a.
NCBI ID   WP_248075158.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2309     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 876403..887611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH59_RS03885 (PSH59_03885) - 877204..877377 (-) 174 WP_248075146.1 DUF3094 family protein -
  PSH59_RS03890 (PSH59_03890) - 877433..878062 (-) 630 WP_248075147.1 DUF1780 domain-containing protein -
  PSH59_RS03895 (PSH59_03895) - 878281..878748 (+) 468 WP_248075149.1 FAD/FMN-containing dehydrogenase -
  PSH59_RS03900 (PSH59_03900) - 878745..879434 (+) 690 WP_305394351.1 energy-coupling factor ABC transporter permease -
  PSH59_RS03905 (PSH59_03905) - 879511..879726 (+) 216 WP_003171680.1 hypothetical protein -
  PSH59_RS03910 (PSH59_03910) yacG 879723..879923 (-) 201 WP_065887991.1 DNA gyrase inhibitor YacG -
  PSH59_RS03915 (PSH59_03915) coaE 879920..880543 (-) 624 WP_305394352.1 dephospho-CoA kinase -
  PSH59_RS03920 (PSH59_03920) pilD 880540..881406 (-) 867 WP_248075156.1 A24 family peptidase Machinery gene
  PSH59_RS03925 (PSH59_03925) pilC 881403..882611 (-) 1209 WP_248075158.1 type II secretion system F family protein Machinery gene
  PSH59_RS03930 (PSH59_03930) - 882814..883227 (+) 414 WP_305395267.1 pilin -
  PSH59_RS03935 (PSH59_03935) - 883262..884662 (+) 1401 WP_248075162.1 O-antigen ligase -
  PSH59_RS03945 (PSH59_03945) - 884935..885240 (+) 306 WP_248075164.1 DUF6388 family protein -
  PSH59_RS03950 (PSH59_03950) nadC 885305..886153 (-) 849 WP_248075166.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43207.49 Da        Isoelectric Point: 10.2240

>NTDB_id=785126 PSH59_RS03925 WP_248075158.1 881403..882611(-) (pilC) [Pseudomonas sp. FP2309]
MSNASTTYAWEGINRKGRRVSGQTAGHNPTVVKAQLRQQGISPGRVRQKSPVLPSLGPAIKSADITLFTRQLATLLKAGI
ALLQAFDIISEGFDNRPARELVQSLKQQIAAGTSLAVALRKHPRYFDDLYCNLVAAGEQAGALDSLLERVAIHREKSELL
KARIKKAMTYPIAVLVIASVVTAVLLIHVVPQFQTLFAGVNGELPGFTLHVIALSAFMQQAWWILALGLGTGTVGLRHAY
QTSPGFRYWLDAGLLKAPLAGKLLTKSAVARFARTLSTTFAAGVPLVQALDCVAGAAGNGPFKQAIERMRRDVSTGMQLN
QSMLANGLFPGMAIQMTAIGEESGTLERMLEKVAHHYETDVDNLVDNLTSLMEPLIMVILGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=785126 PSH59_RS03925 WP_248075158.1 881403..882611(-) (pilC) [Pseudomonas sp. FP2309]
ATGAGCAATGCTTCGACGACATACGCCTGGGAAGGCATCAACCGCAAAGGACGCCGGGTGTCCGGGCAAACCGCCGGGCA
CAACCCGACCGTGGTCAAGGCGCAGTTGCGTCAGCAAGGCATTAGCCCTGGACGAGTGCGCCAAAAATCTCCGGTGCTGC
CGAGCCTGGGCCCAGCGATCAAATCAGCCGATATCACCCTGTTTACGCGCCAACTGGCCACGCTGCTCAAAGCGGGGATC
GCCCTTTTGCAGGCCTTCGACATCATCAGTGAAGGCTTTGACAATCGCCCTGCGCGCGAACTGGTGCAAAGCCTGAAGCA
ACAGATCGCCGCCGGTACCAGCCTGGCCGTCGCGCTGCGCAAACACCCACGCTATTTCGATGACTTGTACTGCAACCTGG
TCGCTGCCGGCGAGCAGGCCGGGGCACTCGACTCCCTCCTCGAGCGCGTGGCGATCCACCGGGAGAAGAGCGAGCTGCTC
AAGGCTCGGATCAAGAAGGCCATGACCTACCCCATTGCTGTACTGGTGATCGCCAGCGTTGTGACTGCCGTGCTGCTGAT
CCATGTGGTGCCGCAATTCCAGACTTTGTTCGCCGGGGTCAACGGCGAACTGCCAGGGTTTACCTTGCATGTCATCGCTC
TGTCAGCGTTTATGCAGCAGGCTTGGTGGATATTGGCGCTGGGCCTGGGGACAGGCACGGTGGGGCTGCGCCATGCGTAT
CAAACCTCGCCGGGTTTTCGCTATTGGCTGGATGCCGGTTTGTTGAAAGCGCCGCTGGCAGGCAAACTGCTGACAAAATC
CGCCGTAGCCCGCTTCGCCCGCACCCTTTCCACGACCTTTGCCGCCGGTGTCCCATTGGTGCAGGCGTTGGATTGCGTGG
CGGGTGCGGCGGGAAACGGTCCGTTCAAACAGGCAATCGAGCGTATGCGTCGCGATGTATCTACCGGCATGCAGTTGAAT
CAATCCATGCTCGCCAACGGCCTGTTCCCTGGCATGGCGATCCAGATGACCGCGATCGGCGAAGAGTCGGGCACGCTGGA
ACGCATGCTGGAAAAAGTCGCCCACCACTATGAAACCGATGTGGACAACCTGGTCGACAACCTCACCAGCCTGATGGAGC
CGTTGATCATGGTGATACTGGGGGGCATTGTCGGAGCACTGGTGATCGCCATGTACCTGCCGGTGTTCCAGCTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.091

98.507

0.582
  pilC Acinetobacter baumannii D1279779

50.505

98.507

0.498
  pilC Acinetobacter baylyi ADP1

50.253

98.507

0.495
  pilC Legionella pneumophila strain ERS1305867

50

98.507

0.493
  pilG Neisseria gonorrhoeae MS11

41.732

94.776

0.396
  pilC Vibrio cholerae strain A1552

39.798

98.756

0.393
  pilG Neisseria meningitidis 44/76-A

40.945

94.776

0.388
  pilC Vibrio campbellii strain DS40M4

38.889

98.507

0.383
  pilC Thermus thermophilus HB27

38.25

99.502

0.381