Detailed information NTG0785125

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH59_RS03920
• Genome accession: NZ_CP117439
• Coordinates: 880540..881406 (-)
• Length: 288 a.a.
• NCBI ID: WP_248075156.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP2309
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 875540..886406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH59_RS03880 (PSH59_03880)	-	875845..877143 (-)	1299	WP_305394350.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH59_RS03885 (PSH59_03885)	-	877204..877377 (-)	174	WP_248075146.1	DUF3094 family protein	-
PSH59_RS03890 (PSH59_03890)	-	877433..878062 (-)	630	WP_248075147.1	DUF1780 domain-containing protein	-
PSH59_RS03895 (PSH59_03895)	-	878281..878748 (+)	468	WP_248075149.1	FAD/FMN-containing dehydrogenase	-
PSH59_RS03900 (PSH59_03900)	-	878745..879434 (+)	690	WP_305394351.1	energy-coupling factor ABC transporter permease	-
PSH59_RS03905 (PSH59_03905)	-	879511..879726 (+)	216	WP_003171680.1	hypothetical protein	-
PSH59_RS03910 (PSH59_03910)	yacG	879723..879923 (-)	201	WP_065887991.1	DNA gyrase inhibitor YacG	-
PSH59_RS03915 (PSH59_03915)	coaE	879920..880543 (-)	624	WP_305394352.1	dephospho-CoA kinase	-
PSH59_RS03920 (PSH59_03920)	pilD	880540..881406 (-)	867	WP_248075156.1	A24 family peptidase	Machinery gene
PSH59_RS03925 (PSH59_03925)	pilC	881403..882611 (-)	1209	WP_248075158.1	type II secretion system F family protein	Machinery gene
PSH59_RS03930 (PSH59_03930)	-	882814..883227 (+)	414	WP_305395267.1	pilin	-
PSH59_RS03935 (PSH59_03935)	-	883262..884662 (+)	1401	WP_248075162.1	O-antigen ligase	-
PSH59_RS03945 (PSH59_03945)	-	884935..885240 (+)	306	WP_248075164.1	DUF6388 family protein	-
PSH59_RS03950 (PSH59_03950)	nadC	885305..886153 (-)	849	WP_248075166.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31622.71 Da
• Isoelectric Point: 7.4001

>NTDB_id=785125 PSH59_RS03920 WP_248075156.1 880540..881406(-) (pilD) [Pseudomonas sp. FP2309]
MSLLLSEYPWAFVAIASVLGLIVGSFLNVLVWRLPKILEREWRAQAHEVLGLPAEPLGPTYNLMHPNSCCPHCGHAIRPW
ENIPVFSYLLLRGRCAHCQGSIGARYPLTELGCGLISALVAWHFGFGWQAAAVLVVSWGLLAMSLIDIDHQLLPDVLVLP
LLWLGLIVNAFGLLTTLPDALWGAVLGYMSLWSVFWLFKLITGKDGMGHGDFKLLALLGAWGGWQIVPMTLLMASLVGVI
IGLILMRLRNAQASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785125 PSH59_RS03920 WP_248075156.1 880540..881406(-) (pilD) [Pseudomonas sp. FP2309]
TTGAGCCTGCTGTTAAGCGAGTACCCGTGGGCCTTTGTCGCGATCGCGTCAGTGCTGGGGCTGATCGTCGGCAGCTTTCT
CAATGTGCTGGTCTGGCGTTTGCCAAAAATACTCGAACGCGAATGGCGCGCCCAGGCCCATGAAGTGCTCGGTTTGCCCG
CCGAGCCCCTGGGACCGACCTACAACCTGATGCACCCGAACTCCTGCTGCCCCCACTGTGGGCATGCAATACGCCCCTGG
GAAAATATCCCCGTGTTCAGTTACCTGCTGCTCAGGGGCCGCTGCGCCCACTGCCAGGGGTCAATTGGTGCGCGCTACCC
ATTGACCGAACTGGGGTGCGGCCTGATCTCGGCACTGGTGGCCTGGCACTTCGGCTTCGGCTGGCAGGCCGCAGCGGTGC
TGGTGGTGAGCTGGGGATTGCTGGCAATGAGCTTGATCGATATCGACCATCAGTTGCTGCCGGATGTGCTGGTGCTACCG
CTGCTATGGCTGGGGCTGATCGTCAATGCTTTTGGGTTACTGACGACACTGCCCGATGCGCTGTGGGGAGCGGTGCTTGG
ATACATGAGCCTGTGGAGCGTTTTCTGGCTCTTCAAGCTGATCACCGGCAAGGACGGCATGGGCCACGGCGACTTTAAGC
TACTGGCCCTGCTCGGGGCCTGGGGTGGCTGGCAGATAGTCCCCATGACACTGTTGATGGCCTCGCTGGTCGGGGTGATC
ATCGGCCTGATCCTGATGCGCCTGCGCAACGCCCAAGCGTCGACGCCCATGCCCTTTGGGCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.025	97.569	0.517
pilD	Vibrio campbellii strain DS40M4	52.5	97.222	0.51
pilD	Acinetobacter baumannii D1279779	48.718	94.792	0.462
pilD	Neisseria gonorrhoeae MS11	48.519	93.75	0.455
pilD	Acinetobacter nosocomialis M2	47.985	94.792	0.455