Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH96_RS04110 Genome accession   NZ_CP117436
Coordinates   939732..940940 (-) Length   402 a.a.
NCBI ID   WP_305457687.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2338     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 934732..945940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH96_RS04075 (PSH96_04075) - 936059..936232 (-) 174 WP_017134503.1 DUF3094 family protein -
  PSH96_RS04080 (PSH96_04080) - 936322..936951 (-) 630 WP_305457679.1 DUF1780 domain-containing protein -
  PSH96_RS04085 (PSH96_04085) - 937081..937770 (+) 690 WP_305457681.1 energy-coupling factor ABC transporter permease -
  PSH96_RS04090 (PSH96_04090) - 937840..938055 (+) 216 WP_003171680.1 hypothetical protein -
  PSH96_RS04095 (PSH96_04095) yacG 938052..938252 (-) 201 WP_138816887.1 DNA gyrase inhibitor YacG -
  PSH96_RS04100 (PSH96_04100) coaE 938249..938872 (-) 624 WP_305457683.1 dephospho-CoA kinase -
  PSH96_RS04105 (PSH96_04105) pilD 938869..939735 (-) 867 WP_305457685.1 A24 family peptidase Machinery gene
  PSH96_RS04110 (PSH96_04110) pilC 939732..940940 (-) 1209 WP_305457687.1 type II secretion system F family protein Machinery gene
  PSH96_RS04115 (PSH96_04115) - 941143..941556 (+) 414 WP_069786045.1 pilin -
  PSH96_RS04125 (PSH96_04125) - 941860..942165 (+) 306 WP_068931343.1 DUF6388 family protein -
  PSH96_RS04130 (PSH96_04130) nadC 942220..943068 (-) 849 WP_305457690.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PSH96_RS04135 (PSH96_04135) - 943312..945468 (+) 2157 WP_305457692.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43248.75 Da        Isoelectric Point: 9.9396

>NTDB_id=785056 PSH96_RS04110 WP_305457687.1 939732..940940(-) (pilC) [Pseudomonas sp. FP2338]
MNDASTMYAWEGTNRKGRRVAGQTTGHNLALIKAQLRQQGICPGRVRKKSSHLAPFAAPIKPADIALFTRQLATLLKAGI
ALLQAFDIICEGFENRQMRTLIKALKQEISAGNSLAAALRKQPRHFDDLYCNLVAAGEQAGALETLLERVAIHLEKSQQL
KARIKKAMTYPIAVIVVACLVSAVLLIHVVPQFQNLFAGVNGQLPGFTLLVIALSNFLQHAWWMLALGLGMAIAALRHAY
RAYPGFRDGLDAALLSAPLAGTLLRRSAIARYARTLSTTFAAGVPLVQALDSVAGAAGNGLFRKAIEHMRHDVSTGVPLN
QSMAHSGLFPGMAIQMTAIGEESGTLDLMLEKVANHYEADVENLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=785056 PSH96_RS04110 WP_305457687.1 939732..940940(-) (pilC) [Pseudomonas sp. FP2338]
ATGAATGACGCTTCAACGATGTACGCCTGGGAAGGCACCAACCGCAAAGGCCGCCGGGTGGCCGGGCAAACCACCGGGCA
TAACCTGGCACTGATCAAGGCGCAACTGCGCCAGCAGGGAATTTGCCCAGGCCGCGTGCGCAAAAAGTCTTCGCACCTGG
CACCTTTTGCAGCACCGATAAAACCCGCCGATATCGCGCTGTTCACGCGCCAATTGGCGACCCTGTTAAAGGCCGGCATT
GCGCTGCTGCAGGCGTTCGACATCATCTGCGAAGGCTTCGAAAACCGGCAGATGCGCACCCTGATAAAAGCCTTGAAACA
GGAGATTTCCGCCGGTAATAGCCTGGCGGCAGCGCTGCGCAAACAGCCGCGTCACTTTGATGATTTGTATTGCAATCTGG
TTGCCGCAGGCGAACAGGCAGGCGCCCTGGAAACATTGCTCGAACGGGTGGCGATTCACCTGGAGAAAAGCCAGCAGCTC
AAGGCGCGAATCAAAAAAGCCATGACCTACCCTATCGCCGTGATCGTCGTCGCCTGCCTGGTCAGTGCAGTTTTGCTTAT
CCACGTGGTGCCGCAGTTCCAGAACCTCTTCGCCGGGGTAAACGGCCAACTGCCAGGCTTTACCTTACTGGTGATTGCGC
TGTCCAACTTCCTGCAGCACGCCTGGTGGATGCTTGCCTTGGGGCTGGGAATGGCAATAGCCGCGCTGCGCCATGCCTAC
CGGGCTTACCCGGGGTTTCGTGACGGGCTGGATGCCGCTTTATTGAGCGCGCCCCTGGCGGGCACACTGCTGAGGCGCTC
AGCCATCGCCCGCTACGCCCGTACACTGTCAACCACCTTTGCCGCGGGCGTGCCATTGGTGCAGGCTCTGGACTCCGTGG
CAGGCGCGGCAGGCAATGGATTGTTCAGAAAGGCGATCGAACATATGCGACACGATGTATCCACAGGTGTGCCGTTGAAC
CAGTCCATGGCCCACAGCGGGCTGTTCCCCGGTATGGCCATCCAGATGACGGCCATCGGTGAAGAGTCGGGCACCCTGGA
CCTCATGCTGGAAAAAGTCGCCAATCACTATGAAGCCGATGTGGAGAACCTGGTCGATAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTGGTGCTGGGGGGCATTGTCGGCGCATTGGTGATTGCCATGTACCTGCCGGTGTTCCAGTTGGGGTCG
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.586

98.507

0.577
  pilC Acinetobacter baylyi ADP1

52.273

98.507

0.515
  pilC Acinetobacter baumannii D1279779

51.646

98.259

0.507
  pilC Legionella pneumophila strain ERS1305867

48.354

98.259

0.475
  pilG Neisseria gonorrhoeae MS11

40.506

98.259

0.398
  pilG Neisseria meningitidis 44/76-A

40

98.259

0.393
  pilC Vibrio cholerae strain A1552

38.653

99.751

0.386
  pilC Thermus thermophilus HB27

37.811

100

0.378
  pilC Vibrio campbellii strain DS40M4

38.287

98.756

0.378