Detailed information NTG0785055

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH96_RS04105
• Genome accession: NZ_CP117436
• Coordinates: 938869..939735 (-)
• Length: 288 a.a.
• NCBI ID: WP_305457685.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP2338
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 933869..944735

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH96_RS04070 (PSH96_04070)	-	934700..935998 (-)	1299	WP_305457677.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH96_RS04075 (PSH96_04075)	-	936059..936232 (-)	174	WP_017134503.1	DUF3094 family protein	-
PSH96_RS04080 (PSH96_04080)	-	936322..936951 (-)	630	WP_305457679.1	DUF1780 domain-containing protein	-
PSH96_RS04085 (PSH96_04085)	-	937081..937770 (+)	690	WP_305457681.1	energy-coupling factor ABC transporter permease	-
PSH96_RS04090 (PSH96_04090)	-	937840..938055 (+)	216	WP_003171680.1	hypothetical protein	-
PSH96_RS04095 (PSH96_04095)	yacG	938052..938252 (-)	201	WP_138816887.1	DNA gyrase inhibitor YacG	-
PSH96_RS04100 (PSH96_04100)	coaE	938249..938872 (-)	624	WP_305457683.1	dephospho-CoA kinase	-
PSH96_RS04105 (PSH96_04105)	pilD	938869..939735 (-)	867	WP_305457685.1	A24 family peptidase	Machinery gene
PSH96_RS04110 (PSH96_04110)	pilC	939732..940940 (-)	1209	WP_305457687.1	type II secretion system F family protein	Machinery gene
PSH96_RS04115 (PSH96_04115)	-	941143..941556 (+)	414	WP_069786045.1	pilin	-
PSH96_RS04125 (PSH96_04125)	-	941860..942165 (+)	306	WP_068931343.1	DUF6388 family protein	-
PSH96_RS04130 (PSH96_04130)	nadC	942220..943068 (-)	849	WP_305457690.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31735.03 Da
• Isoelectric Point: 7.9075

>NTDB_id=785055 PSH96_RS04105 WP_305457685.1 938869..939735(-) (pilD) [Pseudomonas sp. FP2338]
MSLLLSEHPWVFVGMAWVLGLIVGSFLNVLVWRLPKMLVREWRAQAQEILGLPADPVGPAYNLMHPNSCCAHCSQPIRPW
ENIPVLSYLMLKGRCARCSESISARYPFTELACALLSAIVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLILNSGGLLATLPDALWGAVIGYISLWMVFWVFKVITGKDGMGYGDFKLLALLGAWGGWQILPMTLLIASLLGVF
AGLILMRLRKSQASVQMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785055 PSH96_RS04105 WP_305457685.1 938869..939735(-) (pilD) [Pseudomonas sp. FP2338]
TTGAGCCTGCTGCTGAGTGAACACCCCTGGGTCTTTGTCGGGATGGCGTGGGTGCTCGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGTGCGCGAATGGCGCGCCCAGGCCCAGGAAATACTCGGTCTGCCAG
CCGATCCTGTCGGCCCGGCCTACAACCTGATGCATCCCAACTCGTGCTGTGCGCATTGCAGCCAGCCGATTCGCCCCTGG
GAAAATATCCCGGTACTCAGTTACCTGATGCTCAAAGGCCGCTGCGCCCGCTGCAGCGAATCGATCAGCGCCCGCTACCC
CTTCACCGAACTGGCCTGTGCGCTGCTCTCGGCCATAGTCGCCTGGCATTTTGGCTTCGGCTGGCAAGCAGGCGCAGTGA
TGCTGCTGAGTTGGGGGTTGCTGGCCATGAGCCTGATCGACGTCGATCATCAACTGCTGCCGGATGTGCTGGTGTTGCCA
CTGCTGTGGCTGGGGCTGATCCTCAACAGCGGCGGCTTGTTAGCGACGTTGCCCGATGCGCTATGGGGTGCAGTCATAGG
CTACATAAGTCTGTGGATGGTGTTCTGGGTGTTCAAAGTGATCACCGGCAAGGACGGCATGGGTTATGGCGACTTCAAGC
TACTGGCCCTGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGATGACGCTGCTGATAGCGTCGTTGCTGGGCGTGTTC
GCGGGCCTTATCCTGATGCGTTTGCGTAAGTCCCAGGCATCGGTGCAGATGCCATTTGGCCCGTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.254	96.875	0.497
pilD	Vibrio campbellii strain DS40M4	48.571	97.222	0.472
pilD	Acinetobacter baumannii D1279779	47.191	92.708	0.437
pilD	Neisseria gonorrhoeae MS11	48.45	89.583	0.434
pilD	Acinetobacter nosocomialis M2	46.442	92.708	0.431