Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH85_RS03895 Genome accession   NZ_CP117429
Coordinates   870325..871533 (-) Length   402 a.a.
NCBI ID   WP_305378145.1    Uniprot ID   -
Organism   Pseudomonas simiae strain FP689     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 865325..876533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH85_RS03855 (PSH85_03855) - 866243..866416 (-) 174 WP_010213243.1 DUF3094 family protein -
  PSH85_RS03860 (PSH85_03860) - 866471..867100 (-) 630 WP_010213242.1 DUF1780 domain-containing protein -
  PSH85_RS03865 (PSH85_03865) - 867204..867671 (+) 468 WP_010213240.1 hypothetical protein -
  PSH85_RS03870 (PSH85_03870) - 867668..868357 (+) 690 WP_042571059.1 energy-coupling factor ABC transporter permease -
  PSH85_RS03875 (PSH85_03875) - 868433..868648 (+) 216 WP_003171680.1 hypothetical protein -
  PSH85_RS03880 (PSH85_03880) yacG 868645..868845 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  PSH85_RS03885 (PSH85_03885) coaE 868842..869465 (-) 624 WP_021491917.1 dephospho-CoA kinase -
  PSH85_RS03890 (PSH85_03890) pilD 869462..870328 (-) 867 WP_047541162.1 A24 family peptidase Machinery gene
  PSH85_RS03895 (PSH85_03895) pilC 870325..871533 (-) 1209 WP_305378145.1 type II secretion system F family protein Machinery gene
  PSH85_RS03900 (PSH85_03900) - 871727..872149 (+) 423 WP_021491914.1 pilin -
  PSH85_RS03905 (PSH85_03905) - 872185..873585 (+) 1401 WP_044286634.1 O-antigen ligase -
  PSH85_RS03915 (PSH85_03915) - 873852..874157 (+) 306 WP_010213230.1 DUF6388 family protein -
  PSH85_RS03920 (PSH85_03920) nadC 874205..875053 (-) 849 WP_010213228.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43386.79 Da        Isoelectric Point: 10.1005

>NTDB_id=784880 PSH85_RS03895 WP_305378145.1 870325..871533(-) (pilC) [Pseudomonas simiae strain FP689]
MDNASTLYAWEGINRKGRRVSGQTTGHNPALVKAQLRKQGICPGRVRKKSPVLSSLAPSITSTDITLFTRQLATLLKAGI
PLLQAFDIIAEGFDNRALRERVQGLKQAIEAGTSLAEALRKQPRCFDELYCNLVAAGEQAGALETLLERVAIHREKSEQL
KTRIKKAMTYPITVLVVASLVTGVLLVHVVPQFQNLFAGVDGKLPGFTLQVIGLSEFMQKAWWAVALGGLAGGLGLREAY
RRLADFRLWLDSCLLKAPVAGKLLSKSAVARFARTLSTTFAAGVPLLQALDSVAGAAGSGPFRRAIEQMRRDVATGMPLN
QSMLTSGLFPGMAIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDHLTHLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=784880 PSH85_RS03895 WP_305378145.1 870325..871533(-) (pilC) [Pseudomonas simiae strain FP689]
ATGGACAACGCTTCAACGCTCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGTCCGGGCAAACCACCGGACA
CAACCCTGCCCTGGTGAAGGCACAATTGCGAAAACAGGGCATCTGCCCAGGGCGTGTGCGCAAAAAATCCCCAGTGCTGT
CGAGCCTGGCACCCTCGATCACATCAACCGACATCACCCTGTTCACTCGCCAACTGGCCACCCTGCTGAAGGCCGGTATT
CCGCTGCTGCAGGCCTTCGACATCATCGCTGAGGGCTTCGACAACCGCGCCTTGCGTGAGCGTGTGCAAGGGTTGAAACA
GGCCATCGAAGCCGGCACCAGCCTTGCCGAGGCGCTGCGCAAGCAGCCGCGTTGTTTCGACGAGCTGTACTGCAACCTGG
TGGCCGCCGGCGAACAGGCCGGAGCACTTGAAACCTTGCTGGAGCGCGTGGCGATCCACCGGGAAAAGAGCGAGCAGCTA
AAGACGAGGATCAAAAAAGCCATGACCTATCCGATCACCGTGCTGGTGGTCGCCAGCCTCGTCACCGGCGTGCTGCTGGT
CCACGTCGTGCCACAGTTCCAGAACCTGTTTGCCGGGGTCGACGGCAAGCTGCCGGGTTTCACCCTGCAGGTCATCGGCC
TTTCCGAGTTCATGCAGAAAGCCTGGTGGGCCGTGGCGCTGGGCGGTCTTGCGGGAGGCCTGGGGCTGCGCGAAGCGTAT
CGGCGCTTGGCGGATTTCCGTCTATGGCTGGACAGCTGTTTGTTGAAAGCGCCCGTGGCAGGCAAACTGCTGAGCAAATC
CGCCGTGGCCCGCTTCGCCCGCACACTGTCCACCACGTTTGCCGCCGGCGTTCCGTTACTGCAGGCACTGGATTCAGTGG
CCGGTGCCGCCGGTTCCGGGCCATTCAGACGGGCAATCGAACAGATGCGACGCGATGTAGCGACTGGCATGCCATTGAAC
CAATCCATGCTCACCAGCGGCCTGTTCCCCGGCATGGCGATCCAGATGACAGCCATCGGCGAAGAGTCGGGCACACTGGA
CCGCATGCTGGAAAAGGTCGCCAACCATTACGAGGCCGATGTGGACAACCTGGTCGATCACCTCACCCACCTCATGGAGC
CCCTGATCATGGTGGTCCTGGGAGGCATTGTCGGCGCATTGGTGATCGCCATGTACCTGCCAGTCTTCCAGTTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.453

98.756

0.597
  pilC Acinetobacter baumannii D1279779

53.418

98.259

0.525
  pilC Acinetobacter baylyi ADP1

51.768

98.507

0.51
  pilC Legionella pneumophila strain ERS1305867

50.253

98.507

0.495
  pilC Vibrio cholerae strain A1552

41.414

98.507

0.408
  pilG Neisseria gonorrhoeae MS11

41.667

95.522

0.398
  pilC Vibrio campbellii strain DS40M4

40.102

98.01

0.393
  pilG Neisseria meningitidis 44/76-A

40.838

95.025

0.388
  pilC Thermus thermophilus HB27

36.341

99.254

0.361