Detailed information NTG0784879

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH85_RS03890
• Genome accession: NZ_CP117429
• Coordinates: 869462..870328 (-)
• Length: 288 a.a.
• NCBI ID: WP_047541162.1
• Uniprot ID: -
• Organism: Pseudomonas simiae strain FP689
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 864462..875328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH85_RS03850 (PSH85_03850)	-	864884..866182 (-)	1299	WP_042571057.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH85_RS03855 (PSH85_03855)	-	866243..866416 (-)	174	WP_010213243.1	DUF3094 family protein	-
PSH85_RS03860 (PSH85_03860)	-	866471..867100 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
PSH85_RS03865 (PSH85_03865)	-	867204..867671 (+)	468	WP_010213240.1	hypothetical protein	-
PSH85_RS03870 (PSH85_03870)	-	867668..868357 (+)	690	WP_042571059.1	energy-coupling factor ABC transporter permease	-
PSH85_RS03875 (PSH85_03875)	-	868433..868648 (+)	216	WP_003171680.1	hypothetical protein	-
PSH85_RS03880 (PSH85_03880)	yacG	868645..868845 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
PSH85_RS03885 (PSH85_03885)	coaE	868842..869465 (-)	624	WP_021491917.1	dephospho-CoA kinase	-
PSH85_RS03890 (PSH85_03890)	pilD	869462..870328 (-)	867	WP_047541162.1	A24 family peptidase	Machinery gene
PSH85_RS03895 (PSH85_03895)	pilC	870325..871533 (-)	1209	WP_305378145.1	type II secretion system F family protein	Machinery gene
PSH85_RS03900 (PSH85_03900)	-	871727..872149 (+)	423	WP_021491914.1	pilin	-
PSH85_RS03905 (PSH85_03905)	-	872185..873585 (+)	1401	WP_044286634.1	O-antigen ligase	-
PSH85_RS03915 (PSH85_03915)	-	873852..874157 (+)	306	WP_010213230.1	DUF6388 family protein	-
PSH85_RS03920 (PSH85_03920)	nadC	874205..875053 (-)	849	WP_010213228.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31668.84 Da
• Isoelectric Point: 7.9976

>NTDB_id=784879 PSH85_RS03890 WP_047541162.1 869462..870328(-) (pilD) [Pseudomonas simiae strain FP689]
MSLLLAGHPWAFVALASLLGLIVGSFLNVLVWRLPTMLEREWRAQALEVLGMPAEPAGPTYNLMHPSSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISPRYPLTELACALISAWVAWRFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPEALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVV
VGLILMRLRKSHASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=784879 PSH85_RS03890 WP_047541162.1 869462..870328(-) (pilD) [Pseudomonas simiae strain FP689]
TTGAGCCTGCTGTTGGCCGGACACCCCTGGGCTTTTGTTGCGCTGGCGTCGCTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTTCCAACGATGCTCGAACGGGAATGGCGGGCCCAGGCGCTCGAAGTGCTCGGCATGCCCG
CTGAGCCTGCCGGCCCGACCTACAACCTGATGCACCCCAGTTCCTGCTGCCCACACTGCAATCATCCGATACGTCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGCCGCTGCGCCCATTGCCAAGGTGCGATCAGCCCCCGTTATCC
GCTCACTGAACTGGCGTGTGCATTGATCTCAGCCTGGGTGGCCTGGCGTTTCGGCTTTGGCTGGCAGGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGATTGTTGGCGATGAGCCTGATCGATGCAGACCATCAGCTGTTGCCGGATGTGCTAGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACACTGCCCGAGGCCTTGTGGGGTGCGGTCATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGGGGCTGGCAGATCCTGCCCATGACCCTGTTGATGTCGTCGCTGGTGGGTGTGGTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCACGCGTCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.122	96.875	0.524
pilD	Vibrio campbellii strain DS40M4	50	97.222	0.486
pilD	Neisseria gonorrhoeae MS11	50.37	93.75	0.472
pilD	Acinetobacter nosocomialis M2	49.451	94.792	0.469
pilD	Acinetobacter baumannii D1279779	49.084	94.792	0.465