Detailed information NTG0784855

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PSH61_RS03995
• Genome accession: NZ_CP117428
• Coordinates: 892088..893296 (-)
• Length: 402 a.a.
• NCBI ID: WP_305379842.1
• Uniprot ID: -
• Organism: Pseudomonas rhodesiae strain FP69
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 887088..898296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH61_RS03955 (PSH61_03955)	-	888015..888188 (-)	174	WP_034095827.1	DUF3094 family protein	-
PSH61_RS03960 (PSH61_03960)	-	888242..888871 (-)	630	WP_017845475.1	DUF1780 domain-containing protein	-
PSH61_RS03965 (PSH61_03965)	-	888974..889441 (+)	468	WP_305379841.1	FAD/FMN-containing dehydrogenase	-
PSH61_RS03970 (PSH61_03970)	-	889438..890127 (+)	690	WP_034095830.1	energy-coupling factor ABC transporter permease	-
PSH61_RS03975 (PSH61_03975)	-	890193..890408 (+)	216	WP_003171680.1	hypothetical protein	-
PSH61_RS03980 (PSH61_03980)	yacG	890405..890605 (-)	201	WP_034095831.1	DNA gyrase inhibitor YacG	-
PSH61_RS03985 (PSH61_03985)	coaE	890602..891228 (-)	627	WP_034111714.1	dephospho-CoA kinase	-
PSH61_RS03990 (PSH61_03990)	pilD	891225..892091 (-)	867	WP_034136928.1	A24 family peptidase	Machinery gene
PSH61_RS03995 (PSH61_03995)	pilC	892088..893296 (-)	1209	WP_305379842.1	type II secretion system F family protein	Machinery gene
PSH61_RS04000 (PSH61_04000)	-	893500..893913 (+)	414	WP_034095835.1	pilin	-
PSH61_RS04005 (PSH61_04005)	-	893949..895349 (+)	1401	WP_305379843.1	O-antigen ligase	-
PSH61_RS04015 (PSH61_04015)	-	895620..895925 (+)	306	WP_034095837.1	DUF6388 family protein	-
PSH61_RS04020 (PSH61_04020)	nadC	895995..896843 (-)	849	WP_034095838.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 43194.72 Da
• Isoelectric Point: 10.1878

>NTDB_id=784855 PSH61_RS03995 WP_305379842.1 892088..893296(-) (pilC) [Pseudomonas rhodesiae strain FP69]
MNNAVTLYTWEGINRKGRKVSGQSTGRSPAVIKAQLRQQGIRPGRVRKSIPRLPGLAAPIKAADITLLTRQLATLLKAGI
PLLQAFDLISEGVEKPPVGELLQSLRQQVAAGTNLTEALRNHPRYFDELYCHLVAAGEQAGALETLLERLAVHREKSEQL
KARIKKAMTYPIAVVVVAGLVTGVLLVHVVPQFQSLFAGVDGKLPGFTLAVIALSEFMQHAWWIVALGLGVGVIGLRQAC
RKSPIFRHWLDAGLLKAPLAGKLLQKSAVARYARTLSTTFAAGVPLVQALDSVAGAAGSAPYKQAIEHMRRDVSTGMPLN
HAMATSGLFPGMAIQMTAIGEESGTLDFMLEKVASHYETEVDNQVDHLTSLMEPLIMVVLGGIVGALVIAMYLPIFQLGS
AF

Nucleotide

• Length: 1209 bp

>NTDB_id=784855 PSH61_RS03995 WP_305379842.1 892088..893296(-) (pilC) [Pseudomonas rhodesiae strain FP69]
ATGAACAACGCTGTAACGCTTTACACCTGGGAAGGCATCAACCGCAAAGGCCGCAAGGTGTCCGGCCAAAGCACCGGCCG
CAGCCCTGCCGTGATCAAGGCGCAACTGCGCCAACAAGGCATCCGCCCCGGCCGTGTGCGCAAATCAATCCCACGGCTGC
CAGGCCTGGCCGCGCCGATCAAAGCCGCCGACATAACCTTGCTCACCCGCCAGTTGGCCACGTTGCTGAAGGCCGGCATT
CCCCTGCTGCAAGCCTTCGATCTGATCAGCGAAGGTGTCGAGAAGCCGCCTGTGGGTGAATTGCTGCAAAGCCTGAGACA
ACAGGTCGCCGCCGGCACAAATCTGACTGAAGCGTTACGCAATCACCCGCGTTATTTCGATGAGCTGTACTGCCATTTGG
TAGCGGCCGGCGAACAGGCCGGCGCGCTTGAGACGCTGCTGGAGCGCCTGGCGGTTCATCGCGAAAAGAGCGAGCAGCTC
AAAGCCAGGATCAAAAAAGCCATGACCTACCCCATCGCGGTCGTAGTCGTGGCCGGGCTGGTCACTGGCGTGCTGCTGGT
GCATGTGGTGCCGCAGTTCCAGAGCCTGTTCGCAGGAGTGGACGGTAAGCTGCCGGGCTTCACCCTCGCCGTTATCGCCC
TGTCGGAGTTCATGCAACATGCCTGGTGGATCGTCGCGCTGGGGCTTGGTGTGGGGGTTATTGGCCTGCGTCAGGCATGT
CGAAAATCGCCAATCTTTCGCCATTGGCTGGACGCCGGTTTGTTGAAAGCACCGCTGGCAGGCAAACTGCTGCAAAAATC
GGCCGTGGCTCGCTACGCCCGTACGCTTTCAACCACCTTCGCGGCGGGGGTTCCGCTGGTGCAGGCCCTGGATTCAGTGG
CGGGTGCCGCGGGCTCCGCCCCCTACAAACAGGCAATCGAGCATATGCGTCGCGATGTTTCCACAGGTATGCCGTTGAAT
CACGCCATGGCCACCAGTGGTCTGTTTCCAGGGATGGCGATTCAGATGACGGCAATCGGCGAAGAATCCGGCACGCTGGA
TTTCATGCTGGAAAAAGTCGCCAGCCACTACGAAACCGAAGTGGATAACCAGGTCGATCACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTCGTACTGGGAGGCATCGTCGGGGCGTTGGTCATTGCCATGTACTTACCGATCTTCCAACTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (273-394)

• Type II secretion system (T2SS), protein F (T2SSF) (69-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	57.722	98.259	0.567
pilC	Acinetobacter baylyi ADP1	50.758	98.507	0.5
pilC	Acinetobacter baumannii D1279779	50.633	98.259	0.498
pilC	Legionella pneumophila strain ERS1305867	50.38	98.259	0.495
pilC	Vibrio cholerae strain A1552	43.291	98.259	0.425
pilG	Neisseria gonorrhoeae MS11	41.814	98.756	0.413
pilC	Vibrio campbellii strain DS40M4	42.132	98.01	0.413
pilG	Neisseria meningitidis 44/76-A	41.058	98.756	0.405
pilC	Thermus thermophilus HB27	36.591	99.254	0.363