Detailed information NTG0784854

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH61_RS03990
• Genome accession: NZ_CP117428
• Coordinates: 891225..892091 (-)
• Length: 288 a.a.
• NCBI ID: WP_034136928.1
• Uniprot ID: -
• Organism: Pseudomonas rhodesiae strain FP69
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 886225..897091

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH61_RS03950 (PSH61_03950)	-	886656..887954 (-)	1299	WP_305379840.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH61_RS03955 (PSH61_03955)	-	888015..888188 (-)	174	WP_034095827.1	DUF3094 family protein	-
PSH61_RS03960 (PSH61_03960)	-	888242..888871 (-)	630	WP_017845475.1	DUF1780 domain-containing protein	-
PSH61_RS03965 (PSH61_03965)	-	888974..889441 (+)	468	WP_305379841.1	FAD/FMN-containing dehydrogenase	-
PSH61_RS03970 (PSH61_03970)	-	889438..890127 (+)	690	WP_034095830.1	energy-coupling factor ABC transporter permease	-
PSH61_RS03975 (PSH61_03975)	-	890193..890408 (+)	216	WP_003171680.1	hypothetical protein	-
PSH61_RS03980 (PSH61_03980)	yacG	890405..890605 (-)	201	WP_034095831.1	DNA gyrase inhibitor YacG	-
PSH61_RS03985 (PSH61_03985)	coaE	890602..891228 (-)	627	WP_034111714.1	dephospho-CoA kinase	-
PSH61_RS03990 (PSH61_03990)	pilD	891225..892091 (-)	867	WP_034136928.1	A24 family peptidase	Machinery gene
PSH61_RS03995 (PSH61_03995)	pilC	892088..893296 (-)	1209	WP_305379842.1	type II secretion system F family protein	Machinery gene
PSH61_RS04000 (PSH61_04000)	-	893500..893913 (+)	414	WP_034095835.1	pilin	-
PSH61_RS04005 (PSH61_04005)	-	893949..895349 (+)	1401	WP_305379843.1	O-antigen ligase	-
PSH61_RS04015 (PSH61_04015)	-	895620..895925 (+)	306	WP_034095837.1	DUF6388 family protein	-
PSH61_RS04020 (PSH61_04020)	nadC	895995..896843 (-)	849	WP_034095838.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31715.01 Da
• Isoelectric Point: 8.2403

>NTDB_id=784854 PSH61_RS03990 WP_034136928.1 891225..892091(-) (pilD) [Pseudomonas rhodesiae strain FP69]
MILLLNESPWAFVALASVLGLIVGSFLNVLVWRLPKMLAREWRAQAHEVLGLPAEPVGPTYNLMRPNSCCPQCDHGIRPW
ENIPLLSYLILKGRCAHCKARISLRYPFTELACGLLSVIVAWHFGVGWQAGAVLLLTWGLLAMSLIDADHQLLPDVLVLP
LMWLGLIVNSFALLVPLSDAVWGAVAGYMSLWSVFWLFKLITGKDGMGYGDFKLLALLGAWGGWQIVPMTLLMASLVGVF
AGLILMRVRKAQVSTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFQ

Nucleotide

• Length: 867 bp

>NTDB_id=784854 PSH61_RS03990 WP_034136928.1 891225..892091(-) (pilD) [Pseudomonas rhodesiae strain FP69]
TTGATCCTACTGCTGAATGAATCCCCATGGGCCTTTGTCGCCCTGGCTTCGGTGCTGGGGCTGATCGTGGGCAGTTTCCT
CAATGTGCTGGTGTGGCGTCTGCCGAAGATGCTTGCACGGGAGTGGCGTGCCCAGGCCCATGAAGTACTTGGCTTGCCGG
CCGAACCCGTCGGGCCGACCTACAACCTGATGCGCCCAAATTCCTGCTGCCCTCAGTGCGATCATGGGATCCGCCCCTGG
GAAAATATTCCGCTGCTCAGCTATTTGATCCTCAAGGGCCGCTGCGCTCACTGCAAGGCAAGGATCAGCCTGCGCTATCC
ATTCACCGAACTTGCCTGCGGATTGTTGTCGGTGATCGTGGCCTGGCACTTTGGCGTTGGTTGGCAGGCCGGGGCAGTAT
TGCTGCTGACTTGGGGCTTGCTGGCGATGAGCCTGATCGACGCCGACCACCAGTTACTGCCGGATGTGCTGGTACTGCCG
CTTATGTGGCTGGGTCTGATCGTCAACAGCTTTGCACTGCTGGTGCCGTTGTCCGACGCCGTATGGGGAGCGGTGGCCGG
ATACATGAGCCTATGGTCGGTGTTCTGGCTGTTCAAGTTGATCACTGGCAAGGACGGCATGGGCTACGGCGACTTCAAAC
TCCTGGCCCTGCTCGGGGCCTGGGGCGGTTGGCAAATCGTGCCGATGACCCTCTTGATGGCGTCACTGGTTGGGGTATTT
GCCGGGTTGATACTGATGCGCGTGCGCAAGGCCCAGGTGTCCACGCCAATGCCATTTGGGCCCTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.71	98.264	0.528
pilD	Vibrio campbellii strain DS40M4	51.071	97.222	0.497
pilD	Neisseria gonorrhoeae MS11	51.711	91.319	0.472
pilD	Acinetobacter baumannii D1279779	46.886	94.792	0.444
pilD	Acinetobacter nosocomialis M2	46.886	94.792	0.444