Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PQ456_RS08480 Genome accession   NZ_CP117416
Coordinates   1918870..1919253 (+) Length   127 a.a.
NCBI ID   WP_273616281.1    Uniprot ID   A0AAX3M9R0
Organism   Paenibacillus kyungheensis strain KACC 18744     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1913870..1924253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ456_RS08455 (PQ456_08455) - 1914655..1915488 (+) 834 WP_204825023.1 AraC family transcriptional regulator -
  PQ456_RS08460 (PQ456_08460) - 1915677..1916456 (+) 780 WP_273615730.1 alpha/beta hydrolase -
  PQ456_RS08465 (PQ456_08465) - 1916511..1917173 (+) 663 WP_273615731.1 SGNH/GDSL hydrolase family protein -
  PQ456_RS08470 (PQ456_08470) - 1917188..1918099 (+) 912 WP_273615732.1 SMP-30/gluconolactonase/LRE family protein -
  PQ456_RS08475 (PQ456_08475) - 1918242..1918418 (-) 177 WP_069327434.1 YjfB family protein -
  PQ456_RS08480 (PQ456_08480) nucA/comI 1918870..1919253 (+) 384 WP_273616281.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PQ456_RS08485 (PQ456_08485) rsmD 1919478..1920083 (+) 606 WP_420540666.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PQ456_RS08490 (PQ456_08490) coaD 1920076..1920591 (+) 516 WP_273615734.1 pantetheine-phosphate adenylyltransferase -
  PQ456_RS08495 (PQ456_08495) - 1920684..1921709 (+) 1026 WP_273615735.1 PDZ domain-containing protein -
  PQ456_RS08500 (PQ456_08500) - 1921732..1922952 (-) 1221 WP_273615736.1 nucleotidyltransferase -
  PQ456_RS08505 (PQ456_08505) - 1923174..1923614 (+) 441 WP_273615737.1 YceD family protein -
  PQ456_RS08510 (PQ456_08510) rpmF 1923675..1923848 (+) 174 WP_069327428.1 50S ribosomal protein L32 -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13953.42 Da        Isoelectric Point: 4.8834

>NTDB_id=784676 PQ456_RS08480 WP_273616281.1 1918870..1919253(+) (nucA/comI) [Paenibacillus kyungheensis strain KACC 18744]
MSVLFQGEGKIHNTVYAAAAYDYTLTFPTSRYPETADHIKDAIADGHSDVCTIDRDGADQRREDSLKGVPTKSGYDRDEW
PMAMCLEGGTGADIRYVTPSDNRGAGSWVGNQLTKYPDGTKVKFIVQ

Nucleotide


Download         Length: 384 bp        

>NTDB_id=784676 PQ456_RS08480 WP_273616281.1 1918870..1919253(+) (nucA/comI) [Paenibacillus kyungheensis strain KACC 18744]
ATGTCGGTTTTATTTCAAGGCGAGGGCAAAATACATAATACGGTATACGCAGCAGCAGCCTATGATTACACGCTTACTTT
TCCAACCAGTCGTTACCCTGAAACAGCAGATCATATCAAAGATGCCATTGCAGATGGACATTCTGATGTCTGTACGATTG
ATCGTGATGGAGCAGACCAACGACGTGAAGATTCTTTAAAAGGAGTACCTACTAAGTCCGGTTATGATCGTGATGAATGG
CCAATGGCGATGTGTCTGGAAGGCGGAACAGGAGCAGATATCCGTTATGTGACCCCGTCCGATAATCGTGGAGCAGGTTC
TTGGGTCGGCAACCAACTCACCAAATATCCAGATGGAACCAAAGTGAAATTCATAGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

72.897

84.252

0.614