Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   PO908_RS01265 Genome accession   NZ_CP117042
Coordinates   227625..228053 (+) Length   142 a.a.
NCBI ID   WP_021001232.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 222625..233053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS01235 (PO908_01235) - 223078..223437 (+) 360 WP_003028467.1 MerR family transcriptional regulator -
  PO908_RS01240 (PO908_01240) glnA 223476..224822 (+) 1347 WP_003027006.1 type I glutamate--ammonia ligase -
  PO908_RS01245 (PO908_01245) - 225011..225376 (+) 366 WP_003027003.1 DUF1033 family protein -
  PO908_RS01250 (PO908_01250) comYA 225446..226387 (+) 942 WP_394468008.1 competence type IV pilus ATPase ComGA Machinery gene
  PO908_RS01255 (PO908_01255) comYB 226329..227351 (+) 1023 WP_041783985.1 competence type IV pilus assembly protein ComGB Machinery gene
  PO908_RS01260 (PO908_01260) comYC 227348..227665 (+) 318 WP_003028473.1 competence type IV pilus major pilin ComGC Machinery gene
  PO908_RS01265 (PO908_01265) comYD 227625..228053 (+) 429 WP_021001232.1 competence type IV pilus minor pilin ComGD Machinery gene
  PO908_RS01270 (PO908_01270) comGE/cglE 228025..228318 (+) 294 WP_021001233.1 competence type IV pilus minor pilin ComGE Machinery gene
  PO908_RS01275 (PO908_01275) comGF/cglF 228302..228739 (+) 438 WP_041783987.1 competence type IV pilus minor pilin ComGF Machinery gene
  PO908_RS01280 (PO908_01280) comGG 228720..229046 (+) 327 WP_021001234.1 competence type IV pilus minor pilin ComGG -
  PO908_RS01285 (PO908_01285) comYH 229118..230071 (+) 954 WP_021001235.1 class I SAM-dependent methyltransferase Machinery gene
  PO908_RS01290 (PO908_01290) - 230118..231317 (+) 1200 WP_021001236.1 acetate kinase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16313.86 Da        Isoelectric Point: 10.3825

>NTDB_id=782218 PO908_RS01265 WP_021001232.1 227625..228053(+) (comYD) [Streptococcus anginosus strain CGMH_KH1]
MRNIQKKLVLLQIKGFTLLESLLTLFITSFLLLAVSGSVRSSFEQVEEKIFFLEFEHFYRESQKLSSSAQIQLDMNFSRE
RISNGYNHLAVPRSIQAPEDLTLHFDKAGGNSSLGKIVFQTKKQTITYQLYLGNGKFKKTTR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=782218 PO908_RS01265 WP_021001232.1 227625..228053(+) (comYD) [Streptococcus anginosus strain CGMH_KH1]
ATGCGAAACATACAAAAGAAGCTCGTTCTGTTGCAGATTAAGGGATTTACGCTTTTGGAAAGTTTGCTGACATTATTTAT
AACGAGTTTCTTATTGCTTGCGGTGTCGGGCTCTGTTCGTTCTTCTTTTGAACAGGTGGAAGAGAAGATTTTCTTTCTGG
AGTTTGAGCATTTTTATCGGGAAAGTCAGAAGTTGAGTAGTTCAGCTCAAATTCAGTTGGACATGAATTTTTCTCGCGAG
AGGATTTCCAATGGTTACAACCATTTGGCGGTTCCTCGCTCGATTCAAGCGCCAGAAGATTTGACGCTTCATTTTGATAA
GGCTGGAGGCAATTCATCGCTCGGAAAGATTGTCTTTCAGACAAAAAAGCAGACAATTACGTATCAATTATATCTAGGAA
ATGGGAAATTTAAGAAAACAACACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

64.885

92.254

0.599
  comGD/cglD Streptococcus mitis NCTC 12261

57.364

90.845

0.521
  comGD/cglD Streptococcus mitis SK321

56.693

89.437

0.507
  comGD/cglD Streptococcus pneumoniae Rx1

56.693

89.437

0.507
  comGD/cglD Streptococcus pneumoniae D39

56.693

89.437

0.507
  comGD/cglD Streptococcus pneumoniae R6

56.693

89.437

0.507
  comGD/cglD Streptococcus pneumoniae TIGR4

55.906

89.437

0.5
  comYD Streptococcus mutans UA140

53.077

91.549

0.486
  comYD Streptococcus mutans UA159

53.077

91.549

0.486