Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LYZ37_RS13780 Genome accession   NZ_CP117029
Coordinates   2992387..2994081 (-) Length   564 a.a.
NCBI ID   WP_272785848.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2987387..2999081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS13760 (LYZ37_13760) - 2988041..2988868 (-) 828 WP_272785844.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  LYZ37_RS13765 (LYZ37_13765) - 2988962..2990482 (-) 1521 WP_272785845.1 SPOR domain-containing protein -
  LYZ37_RS13770 (LYZ37_13770) aroB 2990575..2991663 (-) 1089 WP_272785846.1 3-dehydroquinate synthase -
  LYZ37_RS13775 (LYZ37_13775) aroK 2991692..2992210 (-) 519 WP_004743301.1 shikimate kinase AroK -
  LYZ37_RS13780 (LYZ37_13780) pilQ 2992387..2994081 (-) 1695 WP_272785848.1 type IV pilus secretin PilQ Machinery gene
  LYZ37_RS13785 (LYZ37_13785) pilP 2994095..2994598 (-) 504 WP_272785849.1 pilus assembly protein PilP Machinery gene
  LYZ37_RS13790 (LYZ37_13790) pilO 2994588..2995175 (-) 588 WP_272785850.1 type 4a pilus biogenesis protein PilO Machinery gene
  LYZ37_RS13795 (LYZ37_13795) pilN 2995162..2995725 (-) 564 WP_272785851.1 PilN domain-containing protein Machinery gene
  LYZ37_RS13800 (LYZ37_13800) pilM 2995715..2996710 (-) 996 WP_272785852.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 61961.97 Da        Isoelectric Point: 4.5388

>NTDB_id=782122 LYZ37_RS13780 WP_272785848.1 2992387..2994081(-) (pilQ) [Vibrio tubiashii strain FP17]
MNRIKGLVAFARSCLQWFTLFVVFLPCVVYAQEQKDNLLQGLDFKLDEQRNAQIVLTLSDSRAVVDIQKVAQGLSITLPQ
TQVTEALIKVFDVTEFGTAVRDIEVFRHPDKVELIAVINGDFRYQDQLEGTRLQVTVVSSRDGQQVDKTSLLDKPGKKLS
LNFQDIPVRNVLQLIADYNDFNLVVSDSVTGNLTLRLEEVSWQKVLDIILQVKGLDKRVEGSIVLVAPKAELDAREQQML
EKARLKEQLGELLSDIIQIKFAKAADIADLIDGGGEFSMLSPRGSLSVDERTNALLIRDLEQNVDVIRSIVESLDIPVKQ
VQIEARIVTVNEGNLDELGVRWGFSNTNGSTSIGASIEDNVFDVVPIDDMLNVNLGATSANASTVAFQVAKLGSDMLLDL
ELSALQRESKAEVISSPRLITTNKKPAYIEQGSEIPYLESSSSGATSVSFKKAVLSLKVTPQITPDNRLILDLSVTQDRP
GDVVKTGTGEAVAINTQRIGTQVLVENGETVVLGGIFQHSVTDAVDKVPFFGDLPLLGALFRRTYQQMGKSELLIFVTPK
VVIE

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=782122 LYZ37_RS13780 WP_272785848.1 2992387..2994081(-) (pilQ) [Vibrio tubiashii strain FP17]
ATGAATAGGATAAAAGGATTGGTGGCTTTTGCTAGAAGCTGTTTGCAATGGTTCACCTTGTTTGTGGTGTTCCTCCCCTG
TGTTGTTTATGCCCAAGAGCAAAAGGACAATCTGCTGCAAGGCTTGGATTTTAAACTTGATGAGCAGCGCAACGCGCAAA
TTGTTCTAACCTTGTCTGACTCTCGTGCTGTGGTCGATATACAAAAAGTGGCGCAGGGGTTAAGTATTACCTTGCCACAA
ACCCAAGTGACAGAAGCGTTAATCAAGGTATTTGACGTGACCGAGTTTGGCACTGCGGTGCGTGATATTGAAGTCTTTCG
CCATCCAGACAAGGTCGAGTTGATAGCAGTAATTAATGGGGACTTTCGTTACCAAGACCAACTTGAAGGGACTCGATTAC
AAGTGACCGTGGTGAGCAGTCGTGATGGTCAGCAGGTAGACAAAACAAGTCTTCTCGATAAGCCAGGCAAGAAATTATCA
CTTAACTTTCAAGATATTCCGGTTAGAAATGTGCTGCAATTGATCGCCGATTACAATGATTTCAACTTGGTTGTTTCCGA
TTCGGTGACGGGCAATCTGACTTTACGCCTTGAGGAGGTGTCATGGCAGAAGGTGCTCGATATCATCCTTCAGGTCAAAG
GGTTAGATAAACGTGTCGAAGGAAGCATTGTTTTGGTCGCGCCAAAAGCGGAACTGGATGCCCGTGAGCAGCAGATGCTG
GAGAAAGCGCGTTTAAAGGAACAGCTAGGGGAACTGTTGTCGGATATCATCCAAATTAAGTTTGCCAAGGCGGCCGATAT
TGCTGACTTAATCGATGGTGGCGGAGAGTTTAGTATGCTGTCTCCGAGGGGGTCTTTGAGTGTGGACGAGCGCACCAACG
CCCTATTGATTCGAGACTTAGAGCAAAATGTTGATGTCATTCGTTCTATTGTCGAATCACTCGATATCCCAGTTAAGCAG
GTGCAAATCGAAGCAAGGATTGTTACGGTTAATGAAGGCAACTTGGATGAGCTTGGGGTACGTTGGGGATTTAGTAACAC
CAACGGCAGTACTTCTATTGGTGCCAGCATTGAAGATAACGTATTCGATGTGGTGCCAATCGATGACATGCTAAACGTGA
ATCTTGGCGCCACCTCAGCTAATGCTTCGACCGTTGCATTTCAAGTCGCTAAGCTTGGCTCCGACATGTTGCTTGACCTT
GAGCTATCGGCATTACAAAGAGAGTCGAAAGCAGAAGTCATCTCAAGCCCGCGTTTGATCACCACTAATAAAAAGCCTGC
CTATATTGAGCAGGGCAGCGAGATTCCTTATCTAGAGTCATCTTCAAGTGGGGCAACCAGCGTTTCGTTTAAGAAGGCAG
TGCTCAGTTTAAAAGTTACGCCACAGATTACCCCAGATAATCGGCTAATTCTGGATTTGAGCGTGACCCAAGATAGGCCA
GGTGATGTGGTGAAAACCGGTACAGGAGAAGCGGTGGCGATCAACACCCAAAGAATTGGCACCCAAGTGCTGGTGGAGAA
TGGAGAAACCGTGGTGCTCGGAGGCATTTTCCAACACAGCGTGACAGATGCAGTCGACAAAGTACCTTTCTTTGGTGATT
TGCCTCTGCTAGGGGCGCTATTTCGTCGTACTTACCAACAAATGGGCAAAAGTGAACTGTTAATTTTTGTCACCCCAAAG
GTCGTGATTGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(404-562)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

66.606

97.695

0.651
  pilQ Vibrio cholerae strain A1552

65.474

99.113

0.649
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

65.474

99.113

0.649
  pilQ Legionella pneumophila strain Lp02

41.948

94.681

0.397
  pilQ Legionella pneumophila strain ERS1305867

41.948

94.681

0.397
  pilQ Pseudomonas aeruginosa PAK

40.768

96.986

0.395
  comQ Acinetobacter baylyi ADP1

38.849

98.582

0.383
  pilQ Acinetobacter baumannii strain A118

36.486

100

0.383
  pilQ Acinetobacter baumannii D1279779

36.486

100

0.383