Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LYZ37_RS13800 Genome accession   NZ_CP117029
Coordinates   2995715..2996710 (-) Length   331 a.a.
NCBI ID   WP_272785852.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2990715..3001710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS13775 (LYZ37_13775) aroK 2991692..2992210 (-) 519 WP_004743301.1 shikimate kinase AroK -
  LYZ37_RS13780 (LYZ37_13780) pilQ 2992387..2994081 (-) 1695 WP_272785848.1 type IV pilus secretin PilQ Machinery gene
  LYZ37_RS13785 (LYZ37_13785) pilP 2994095..2994598 (-) 504 WP_272785849.1 pilus assembly protein PilP Machinery gene
  LYZ37_RS13790 (LYZ37_13790) pilO 2994588..2995175 (-) 588 WP_272785850.1 type 4a pilus biogenesis protein PilO Machinery gene
  LYZ37_RS13795 (LYZ37_13795) pilN 2995162..2995725 (-) 564 WP_272785851.1 PilN domain-containing protein Machinery gene
  LYZ37_RS13800 (LYZ37_13800) pilM 2995715..2996710 (-) 996 WP_272785852.1 type IV pilus assembly protein PilM Machinery gene
  LYZ37_RS13805 (LYZ37_13805) - 2996851..2999370 (+) 2520 WP_272785853.1 penicillin-binding protein 1A -
  LYZ37_RS13810 (LYZ37_13810) oxyR 2999438..3000328 (-) 891 WP_272785854.1 DNA-binding transcriptional regulator OxyR -
  LYZ37_RS13815 (LYZ37_13815) - 3000501..3001232 (+) 732 WP_239827314.1 glutathione peroxidase -
  LYZ37_RS13820 (LYZ37_13820) - 3001298..3001645 (-) 348 WP_004743292.1 RidA family protein -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36716.14 Da        Isoelectric Point: 6.5605

>NTDB_id=782126 LYZ37_RS13800 WP_272785852.1 2995715..2996710(-) (pilM) [Vibrio tubiashii strain FP17]
MGKSLVTGIEIGHHSIKAVVLKPNKGTFALVDYRELPIEAGIFSDNHMSNYQKIVKKLKELRKSLPRFSTKVALAIPDNA
VISKVLQIDSGLSDNEIEYAISDAFSHQTPFPIDDLYLDYVPLTTDGQSPQTHYQVYATKKELVDPRVEVFKSASFQPVV
VDLRAHALVHIWQLAARQQVKTDWLLIDVGFDHASLCMDLADKAPFCKDIVFATHEKEVDSNLCLSLAQSREEFTAELLD
KIQRNLQLIASMHGKSVKGIWLSGVGAAMPVLANDISAHFAIECELLNPLTLFSTTNQQLSDNLLTNGHRFTSAAGIALR
ALTWLESRHAA

Nucleotide


Download         Length: 996 bp        

>NTDB_id=782126 LYZ37_RS13800 WP_272785852.1 2995715..2996710(-) (pilM) [Vibrio tubiashii strain FP17]
ATGGGTAAATCATTAGTTACAGGCATTGAAATTGGACACCACAGTATTAAAGCGGTGGTTCTCAAGCCAAACAAGGGCAC
ATTTGCTCTTGTCGACTATCGAGAATTGCCAATCGAAGCGGGCATTTTCTCTGATAACCATATGTCAAATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAGGAAGAGTTTGCCGCGATTTAGTACGAAAGTTGCATTAGCGATACCAGATAATGCG
GTAATAAGTAAGGTATTACAGATAGATAGCGGGCTTAGCGACAATGAAATTGAGTATGCTATTTCCGATGCATTTTCTCA
CCAAACTCCGTTTCCAATTGACGATCTCTACTTAGATTATGTTCCCCTGACCACTGATGGACAGTCACCGCAAACTCACT
ACCAAGTATACGCGACGAAAAAAGAGCTGGTTGACCCTAGAGTTGAAGTGTTCAAAAGCGCTTCCTTCCAACCCGTTGTG
GTTGATTTACGTGCCCATGCTTTAGTGCATATTTGGCAACTTGCTGCGCGACAACAGGTGAAAACCGACTGGCTTCTGAT
CGATGTTGGTTTTGACCACGCTTCGTTATGTATGGACCTTGCTGATAAAGCGCCTTTTTGCAAAGACATCGTTTTCGCAA
CCCATGAAAAAGAGGTGGATTCAAACCTTTGCTTAAGTCTGGCGCAAAGCCGTGAAGAGTTCACTGCTGAGTTACTAGAT
AAAATCCAACGCAATTTACAGCTTATTGCTTCTATGCACGGTAAGAGTGTTAAAGGGATTTGGCTGTCTGGTGTTGGGGC
TGCCATGCCTGTTCTTGCAAATGACATCAGCGCGCACTTTGCCATTGAATGTGAGCTTCTCAACCCGCTGACTCTTTTTT
CAACAACGAACCAACAGCTATCCGATAATCTGTTGACCAATGGGCATAGGTTCACATCGGCGGCTGGGATTGCTCTGCGC
GCGCTCACTTGGTTGGAGAGTCGTCATGCTGCATAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-197)

Type IV pilus assembly protein PilM; (PilM_2)

(234-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

51.622

100

0.529
  pilM Vibrio campbellii strain DS40M4

42.012

100

0.429