Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PML88_RS11635 Genome accession   NZ_CP116517
Coordinates   2405520..2406761 (-) Length   413 a.a.
NCBI ID   WP_219282478.1    Uniprot ID   -
Organism   Enterococcus faecium strain R39-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2400520..2411761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML88_RS11620 (PML88_11620) rny 2400887..2402443 (-) 1557 WP_098188842.1 ribonuclease Y -
  PML88_RS11625 (PML88_11625) - 2402942..2404237 (-) 1296 WP_002296623.1 ISL3 family transposase -
  PML88_RS11630 (PML88_11630) recA 2404365..2405411 (-) 1047 WP_002298208.1 recombinase RecA Machinery gene
  PML88_RS11635 (PML88_11635) cinA 2405520..2406761 (-) 1242 WP_219282478.1 competence/damage-inducible protein A Machinery gene
  PML88_RS11640 (PML88_11640) pgsA 2407001..2407579 (-) 579 WP_002298210.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PML88_RS11645 (PML88_11645) - 2407788..2408711 (-) 924 WP_002287423.1 RodZ domain-containing protein -
  PML88_RS11650 (PML88_11650) yfmH 2409447..2410733 (-) 1287 WP_002287425.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45485.90 Da        Isoelectric Point: 4.6507

>NTDB_id=777825 PML88_RS11635 WP_219282478.1 2405520..2406761(-) (cinA) [Enterococcus faecium strain R39-1]
MKAEIIAVGTELLLGQVVNTNATFLSEQLADLGIEVYYQTVVGDNQQRLEELIALAETRSELILLCGGLGPTEDDLTKEA
TAVHLGKSLIQNTEGYKKLLVYFETTHRKMTKNNLQQSQIIEGGIPLPNRTGLALGTFYQTDTHAYILLPGPPNELKPMF
VEQVRPLLEERFPSEEKLISKVLRFYGIGESRLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTNDVQAGNQALLALE
EKIQERVGEYFYGYGDDNSLAKVVVELLKENKQTVTAAESLTAGAFQAALGDIAGVSEVFPGGFVTYSLQTKAGFLEIDP
ELLAEYGTVSKECVEQMAIQAREIARTDYSVAFTGVAGPDTLEGQSAGTVWIAISSKDGVVSEKYHFARDRAAIRYNAVM
QGFDLLRKQLLRK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=777825 PML88_RS11635 WP_219282478.1 2405520..2406761(-) (cinA) [Enterococcus faecium strain R39-1]
ATGAAAGCAGAAATAATAGCTGTCGGAACAGAACTTTTACTAGGACAAGTCGTGAATACGAATGCCACTTTCTTGTCAGA
ACAGCTAGCTGATCTAGGTATCGAAGTTTATTATCAAACAGTTGTAGGAGATAATCAGCAGCGTTTAGAAGAGTTGATTG
CTCTAGCTGAAACAAGAAGTGAACTCATACTCTTATGTGGCGGATTAGGACCGACAGAAGATGACCTGACAAAAGAAGCA
ACTGCGGTTCACCTCGGTAAGTCTCTCATACAAAATACGGAAGGATACAAAAAATTATTGGTATATTTTGAAACAACCCA
TCGAAAAATGACCAAAAACAATCTGCAACAGTCCCAGATCATCGAAGGCGGGATTCCTCTACCAAATCGTACAGGGCTTG
CTTTAGGGACTTTTTATCAAACAGATACACATGCGTATATCCTTCTTCCCGGTCCGCCTAATGAGTTGAAACCAATGTTT
GTGGAACAAGTACGTCCTTTACTAGAGGAACGTTTTCCTTCTGAAGAAAAACTAATTTCTAAAGTTTTGCGCTTTTATGG
GATTGGTGAATCGCGACTGGTCACTGAGCTAAAAGATCTGATTGAAACACAGATCAATCCAACGATCGCACCATATGCCA
AACCAAATGAAGTGACATTACGACTGACAGTGAAAACAAATGATGTTCAGGCAGGGAATCAAGCTCTTTTAGCATTAGAA
GAAAAAATCCAAGAACGAGTAGGGGAATATTTTTATGGATACGGCGATGATAATTCGCTAGCAAAAGTCGTAGTGGAACT
ACTGAAAGAAAACAAGCAGACTGTAACAGCAGCGGAAAGTTTGACAGCCGGCGCCTTCCAAGCCGCATTAGGCGACATTG
CTGGTGTATCTGAAGTATTTCCAGGCGGATTCGTTACCTACTCGCTCCAAACAAAAGCTGGTTTTCTGGAGATTGATCCG
GAGCTATTAGCAGAATATGGAACAGTCAGCAAAGAATGTGTGGAGCAGATGGCCATTCAAGCACGTGAGATAGCAAGAAC
AGATTACAGTGTAGCTTTCACCGGAGTGGCTGGACCGGACACGTTAGAAGGTCAATCTGCAGGAACAGTATGGATCGCTA
TTTCATCTAAAGACGGCGTGGTTTCGGAAAAATATCACTTTGCCAGAGATCGTGCTGCTATCAGATATAATGCGGTTATG
CAAGGATTTGATCTTTTGAGAAAACAGCTTTTAAGAAAATGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.429

100

0.523
  cinA Streptococcus pneumoniae TIGR4

51.19

100

0.521
  cinA Streptococcus mitis NCTC 12261

51.19

100

0.521
  cinA Streptococcus mutans UA159

51.566

100

0.518
  cinA Streptococcus pneumoniae R6

50.952

100

0.518
  cinA Streptococcus pneumoniae Rx1

50.952

100

0.518
  cinA Streptococcus pneumoniae D39

50.952

100

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

47.573

99.758

0.475
  cinA Streptococcus suis isolate S10

41.787

100

0.419