Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PFZ56_RS00945 Genome accession   NZ_CP116502
Coordinates   192784..194001 (+) Length   405 a.a.
NCBI ID   WP_170002376.1    Uniprot ID   -
Organism   Pseudomonas danubii strain JDS02PS016     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 187784..199001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ56_RS00930 (PFZ56_00910) - 188442..191360 (+) 2919 WP_170002378.1 DUF748 domain-containing protein -
  PFZ56_RS00935 (PFZ56_00915) - 191546..191902 (-) 357 WP_102865479.1 BON domain-containing protein -
  PFZ56_RS00940 (PFZ56_00920) - 192142..192558 (-) 417 WP_102882235.1 pilin -
  PFZ56_RS00945 (PFZ56_00925) pilC 192784..194001 (+) 1218 WP_170002376.1 type II secretion system F family protein Machinery gene
  PFZ56_RS00950 (PFZ56_00930) pilD 194004..194876 (+) 873 WP_123390445.1 A24 family peptidase Machinery gene
  PFZ56_RS00955 (PFZ56_00935) coaE 194873..195496 (+) 624 WP_123390443.1 dephospho-CoA kinase -
  PFZ56_RS00960 (PFZ56_00940) yacG 195493..195696 (+) 204 WP_102865474.1 DNA gyrase inhibitor YacG -
  PFZ56_RS00965 (PFZ56_00945) - 195716..195931 (-) 216 WP_102865473.1 hypothetical protein -
  PFZ56_RS00970 (PFZ56_00950) - 195995..196684 (-) 690 WP_170002374.1 energy-coupling factor ABC transporter permease -
  PFZ56_RS00975 (PFZ56_00955) - 196681..197148 (-) 468 WP_170002372.1 FAD/FMN-containing dehydrogenase -
  PFZ56_RS00980 (PFZ56_00960) - 197294..197923 (+) 630 WP_102882240.1 DUF1780 domain-containing protein -
  PFZ56_RS00985 (PFZ56_00965) - 198112..198285 (+) 174 WP_043274580.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44186.88 Da        Isoelectric Point: 10.7326

>NTDB_id=777632 PFZ56_RS00945 WP_170002376.1 192784..194001(+) (pilC) [Pseudomonas danubii strain JDS02PS016]
MAVKAPVASVYLWQGTDGQGHKLAGELSAANPALIRAQLRRQGITPTRVRRKPRAWLRSGQRIKAREIALFTRQLATLMQ
AGVPLLQAFEIIAESFVQPLMRQLLASLKRDIEAGSSLATALRRHPRHFDELYCNLVEAGEQSGALDTLLERVATHREKS
ENLKARVKKAMVYPVAVIGVAVLVSSILLTKVVPQFQSLFAGFNAQLPLLTQWVITLSHVIQNHGGWLLSAGLLMGVGIR
QAYRRSERLRDSVDQGLLRLPLAGPLLYKAAVARYARTLATTFAAGVPLVQALDSVAGASGNKVFRQAVERIRQQVASGM
QLNFAMRASGVFPTMAIQMTAIGEESGMLDHLLEKVAAHYEVEVDHLVDSLTSLMEPLIMVILGSIVGALVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=777632 PFZ56_RS00945 WP_170002376.1 192784..194001(+) (pilC) [Pseudomonas danubii strain JDS02PS016]
ATGGCGGTAAAAGCACCTGTGGCCAGCGTCTATCTCTGGCAAGGCACCGACGGCCAGGGCCACAAGTTGGCCGGCGAGCT
GAGCGCTGCAAACCCGGCGCTGATCCGAGCTCAGCTGCGCAGGCAAGGCATCACTCCAACCCGGGTACGCCGCAAGCCCA
GGGCCTGGCTCCGATCGGGCCAACGAATCAAGGCACGGGAGATCGCCCTGTTCACCCGGCAACTGGCAACCCTGATGCAG
GCCGGAGTGCCACTGCTGCAAGCCTTCGAAATCATTGCCGAGAGCTTCGTCCAGCCATTGATGCGCCAACTGCTGGCCAG
CCTCAAACGCGACATCGAGGCTGGCTCCAGCCTGGCCACGGCGCTGCGCCGACATCCGCGCCACTTTGACGAGCTGTACT
GCAATCTGGTGGAGGCCGGCGAACAGTCCGGCGCCCTGGATACCCTGCTGGAACGGGTCGCCACCCATAGGGAAAAAAGC
GAGAACCTCAAGGCCCGGGTAAAAAAGGCCATGGTCTATCCCGTGGCGGTGATCGGCGTGGCCGTCCTGGTCAGCAGCAT
CCTGCTGACCAAGGTGGTTCCCCAGTTCCAGAGCCTGTTCGCCGGGTTCAACGCCCAATTGCCGCTACTGACCCAATGGG
TCATCACCCTTTCCCATGTCATCCAGAACCACGGCGGATGGTTGCTCAGCGCCGGCCTGCTGATGGGGGTAGGGATCAGG
CAGGCTTATCGGCGCTCGGAGCGCCTGCGGGACAGTGTGGATCAGGGACTGCTACGCCTGCCCTTGGCCGGCCCGCTGCT
GTACAAGGCCGCAGTGGCCCGCTACGCCCGTACGCTGGCCACCACCTTCGCGGCTGGCGTGCCTCTGGTCCAGGCCCTGG
ATTCAGTGGCCGGAGCCAGCGGCAACAAGGTCTTCAGGCAAGCGGTGGAACGCATCCGCCAACAGGTGGCCAGTGGCATG
CAACTGAACTTTGCCATGCGTGCCAGCGGCGTCTTCCCTACTATGGCGATCCAGATGACCGCCATCGGTGAAGAGTCCGG
AATGCTGGATCATCTGCTGGAAAAAGTCGCAGCGCATTATGAGGTCGAGGTGGACCACCTGGTCGACAGCCTGACCAGCC
TCATGGAGCCGTTGATCATGGTCATCCTGGGCAGTATCGTCGGCGCCCTGGTGGTTGCCATGTACCTGCCCATCTTTCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.025

100

0.58
  pilC Acinetobacter baylyi ADP1

54.523

100

0.551
  pilC Acinetobacter baumannii D1279779

53.186

100

0.536
  pilC Legionella pneumophila strain ERS1305867

48.655

100

0.491
  pilC Vibrio campbellii strain DS40M4

42.04

99.259

0.417
  pilC Vibrio cholerae strain A1552

43.112

96.79

0.417
  pilG Neisseria meningitidis 44/76-A

41.855

98.519

0.412
  pilG Neisseria gonorrhoeae MS11

42.065

98.025

0.412
  pilC Thermus thermophilus HB27

38.25

98.765

0.378