Detailed information NTG0777633

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PFZ56_RS00950
• Genome accession: NZ_CP116502
• Coordinates: 194004..194876 (+)
• Length: 290 a.a.
• NCBI ID: WP_123390445.1
• Uniprot ID: -
• Organism: Pseudomonas danubii strain JDS02PS016
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 189004..199876

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PFZ56_RS00935 (PFZ56_00915)	-	191546..191902 (-)	357	WP_102865479.1	BON domain-containing protein	-
PFZ56_RS00940 (PFZ56_00920)	-	192142..192558 (-)	417	WP_102882235.1	pilin	-
PFZ56_RS00945 (PFZ56_00925)	pilC	192784..194001 (+)	1218	WP_170002376.1	type II secretion system F family protein	Machinery gene
PFZ56_RS00950 (PFZ56_00930)	pilD	194004..194876 (+)	873	WP_123390445.1	A24 family peptidase	Machinery gene
PFZ56_RS00955 (PFZ56_00935)	coaE	194873..195496 (+)	624	WP_123390443.1	dephospho-CoA kinase	-
PFZ56_RS00960 (PFZ56_00940)	yacG	195493..195696 (+)	204	WP_102865474.1	DNA gyrase inhibitor YacG	-
PFZ56_RS00965 (PFZ56_00945)	-	195716..195931 (-)	216	WP_102865473.1	hypothetical protein	-
PFZ56_RS00970 (PFZ56_00950)	-	195995..196684 (-)	690	WP_170002374.1	energy-coupling factor ABC transporter permease	-
PFZ56_RS00975 (PFZ56_00955)	-	196681..197148 (-)	468	WP_170002372.1	FAD/FMN-containing dehydrogenase	-
PFZ56_RS00980 (PFZ56_00960)	-	197294..197923 (+)	630	WP_102882240.1	DUF1780 domain-containing protein	-
PFZ56_RS00985 (PFZ56_00965)	-	198112..198285 (+)	174	WP_043274580.1	DUF3094 family protein	-
PFZ56_RS00990 (PFZ56_00970)	-	198346..199644 (+)	1299	WP_102865469.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32066.28 Da
• Isoelectric Point: 7.3649

>NTDB_id=777633 PFZ56_RS00950 WP_123390445.1 194004..194876(+) (pilD) [Pseudomonas danubii strain JDS02PS016]
MSLTEAMTLYPLAFVTAALVLGLLVGSFLNVLVWRLPKMLERDWRAQAHEVLGLPPEPVAAPYNLLLPHSQCPHCAQPIR
PWQNIPLLSYLWLRGRCAHCRTAISPRYPLTELACGLISAYVAWHFGFGWPAGLLLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFEVLASLEDALWGAVLGYLCLWSVFWLFKLLTGKDGMGHGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AILGTVMLRLNRAKTSTPIPFGPFLAIAGWIALLWGGQMTDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=777633 PFZ56_RS00950 WP_123390445.1 194004..194876(+) (pilD) [Pseudomonas danubii strain JDS02PS016]
ATGTCCTTGACTGAAGCCATGACCCTTTACCCCCTGGCCTTCGTGACTGCGGCCCTGGTACTGGGGCTGCTCGTAGGCAG
CTTTCTGAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGCGATTGGCGGGCTCAAGCCCACGAAGTGCTGGGAC
TGCCCCCGGAGCCTGTAGCGGCGCCCTACAACCTGCTGCTGCCCCACTCCCAATGCCCCCATTGCGCACAACCGATCCGC
CCCTGGCAAAACATTCCCCTGCTCAGCTATCTGTGGCTGCGGGGCCGTTGCGCCCACTGCAGGACCGCCATCAGCCCGCG
CTACCCACTAACCGAACTGGCTTGCGGGCTGATCTCGGCGTACGTCGCCTGGCACTTCGGTTTTGGCTGGCCCGCGGGCC
TGCTGCTGATCCTCAGTTGGGGGTTACTGGCCATGAGCCTGATCGATGCCGATCACCAACTGCTGCCAGACGTGCTGGTG
TTGCCACTGCTGTGGCTGGGACTGATTGCCAATAGCTTCGAGGTACTGGCGAGCCTGGAGGATGCCCTGTGGGGCGCGGT
ACTCGGCTATCTGTGCCTGTGGTCAGTGTTCTGGCTGTTCAAATTGCTGACCGGCAAGGACGGCATGGGCCACGGCGACT
TCAAGCTGCTAGCGATGCTTGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCTTGCTCCTGTCCTCGCTGGTGGGA
GCGATTCTCGGCACTGTCATGCTGCGCCTGAACCGGGCCAAGACCTCGACGCCCATCCCCTTCGGCCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATGACCGACTTCTATTTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.035	98.276	0.531
pilD	Vibrio campbellii strain DS40M4	49.291	97.241	0.479
pilD	Acinetobacter baumannii D1279779	49.635	94.483	0.469
pilD	Acinetobacter nosocomialis M2	49.635	94.483	0.469
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459