Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PK654_RS15675 Genome accession   NZ_CP116383
Coordinates   3330858..3331961 (-) Length   367 a.a.
NCBI ID   WP_271696858.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3325858..3336961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS15645 (PK654_15645) hemF 3326519..3327424 (-) 906 WP_271696852.1 oxygen-dependent coproporphyrinogen oxidase -
  PK654_RS15650 (PK654_15650) - 3327429..3327986 (-) 558 WP_271696853.1 L-threonylcarbamoyladenylate synthase -
  PK654_RS15655 (PK654_15655) purE 3328157..3328645 (+) 489 WP_271696854.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PK654_RS15660 (PK654_15660) - 3328647..3329771 (+) 1125 WP_271696855.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PK654_RS15665 (PK654_15665) - 3329814..3330368 (-) 555 WP_271696856.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PK654_RS15670 (PK654_15670) - 3330382..3330855 (-) 474 WP_271696857.1 DUF494 family protein -
  PK654_RS15675 (PK654_15675) dprA 3330858..3331961 (-) 1104 WP_271696858.1 DNA-processing protein DprA Machinery gene
  PK654_RS15680 (PK654_15680) def 3332220..3332732 (+) 513 WP_271696859.1 peptide deformylase -
  PK654_RS15685 (PK654_15685) fmt 3332743..3333690 (+) 948 WP_271696860.1 methionyl-tRNA formyltransferase -
  PK654_RS15690 (PK654_15690) rsmB 3333756..3335036 (+) 1281 WP_271696861.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PK654_RS15695 (PK654_15695) trkA 3335084..3336460 (+) 1377 WP_271696862.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39967.14 Da        Isoelectric Point: 8.0774

>NTDB_id=776871 PK654_RS15675 WP_271696858.1 3330858..3331961(-) (dprA) [Vibrio sp. SCSIO 43137]
MTEKELLCWLMLTSVPKIGCRKLTKLLAMGSAENIVGYSHKHLEKLGFSAQQISYLRYEAEKHAERCLNWRNKSSSNNIV
TPHSPEFPPLLKEIASFPLVLFVKGRIELLSSAQIAIVGSRNASLEGLKVAGQFAAMLAESGLTITSGLALGIDGRAHDG
ALSVEGNTIAVLGSGLESVYPAKHRALAKRIESQGLLVSEFWPDSKPRAEHFPRRNRIISGLSLGVLIVEAAIKSGSLIT
ARYAVEQNREVFVVPGMIQNANCRGSNALIQQGAKLVQDCDDILVEIENHLGGSSSYQNSLFTVQQENEQLPFAKLLANV
GVEATPVDILAQRTNIPVHEIMMQLLELELQGHVAAVSGGYIRMRRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=776871 PK654_RS15675 WP_271696858.1 3330858..3331961(-) (dprA) [Vibrio sp. SCSIO 43137]
ATGACAGAGAAAGAGCTATTATGCTGGCTAATGTTAACCTCAGTACCGAAAATAGGTTGCCGAAAGTTAACCAAACTGCT
CGCAATGGGTTCAGCTGAGAATATTGTCGGCTATTCTCATAAACACCTAGAAAAACTAGGCTTTTCTGCGCAACAGATTA
GCTACCTGCGTTACGAGGCAGAAAAGCACGCTGAACGTTGTTTAAACTGGCGAAACAAAAGTTCATCTAACAATATTGTT
ACTCCACATAGTCCTGAGTTCCCTCCCTTGCTAAAAGAGATAGCCTCTTTTCCGTTGGTTCTGTTTGTCAAAGGCCGCAT
TGAGTTACTGAGCTCTGCGCAAATTGCCATTGTCGGCAGTCGTAATGCTTCTCTGGAAGGGCTGAAAGTAGCTGGCCAGT
TTGCCGCTATGCTTGCTGAAAGCGGACTGACCATTACCAGCGGTCTGGCACTTGGTATTGACGGCAGAGCTCATGATGGT
GCTTTGTCTGTTGAGGGGAATACTATCGCTGTGCTGGGATCCGGGCTGGAATCGGTTTATCCGGCAAAACACAGAGCACT
GGCTAAGAGAATAGAATCACAGGGGCTGCTTGTTTCCGAGTTCTGGCCTGATTCAAAACCGCGTGCGGAGCACTTTCCCC
GCCGGAACAGGATCATCAGTGGATTATCTCTTGGCGTACTTATTGTTGAAGCGGCTATAAAGAGTGGCTCCCTGATCACG
GCGAGATATGCCGTTGAGCAGAACCGCGAAGTATTTGTGGTTCCCGGTATGATTCAAAATGCTAATTGCAGGGGAAGTAA
TGCCCTTATCCAGCAAGGCGCTAAGCTGGTACAGGATTGTGATGATATTCTGGTTGAAATAGAAAATCACTTAGGCGGGT
CATCTAGTTATCAAAACAGCTTGTTTACTGTGCAACAAGAAAATGAACAATTGCCATTTGCTAAACTGTTAGCTAACGTA
GGAGTAGAAGCGACACCGGTTGATATTTTGGCACAGAGGACCAATATACCTGTGCATGAAATAATGATGCAGCTTCTGGA
GCTCGAGCTTCAAGGGCATGTTGCTGCCGTTTCAGGTGGCTATATTCGAATGAGGAGGGGTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)

DprA winged helix domain (DprA_WH)

(314-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

57.951

100

0.586
  dprA Vibrio campbellii strain DS40M4

58.127

98.91

0.575
  dprA Glaesserella parasuis strain SC1401

44.022

100

0.441
  dprA Legionella pneumophila strain ERS1305867

43.697

97.275

0.425
  dprA Neisseria meningitidis strain C311

37.811

100

0.414
  dprA Neisseria meningitidis MC58

37.811

100

0.414
  dprA Neisseria gonorrhoeae MS11

37.01

100

0.411
  dprA Neisseria gonorrhoeae strain FA1090

36.765

100

0.409
  dprA Haemophilus influenzae Rd KW20

50.709

76.839

0.39
  dprA Acinetobacter baylyi ADP1

39.763

91.826

0.365