Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QWH96_RS08705 Genome accession   NZ_CP128987
Coordinates   1715125..1715733 (+) Length   202 a.a.
NCBI ID   WP_003060942.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1710125..1720733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS08675 (QWH96_08675) - 1710391..1710873 (+) 483 WP_003061594.1 S-ribosylhomocysteine lyase -
  QWH96_RS08680 (QWH96_08680) - 1710987..1712468 (-) 1482 WP_003062275.1 cell division site-positioning protein MapZ family protein -
  QWH96_RS08685 (QWH96_08685) - 1712482..1713636 (-) 1155 WP_012767432.1 class I SAM-dependent RNA methyltransferase -
  QWH96_RS08695 (QWH96_08695) gpsB 1714081..1714407 (-) 327 WP_003060950.1 cell division regulator GpsB -
  QWH96_RS08700 (QWH96_08700) - 1714529..1715044 (-) 516 WP_003056762.1 DUF1273 domain-containing protein -
  QWH96_RS08705 (QWH96_08705) recU 1715125..1715733 (+) 609 WP_003060942.1 Holliday junction resolvase RecU Machinery gene
  QWH96_RS08710 (QWH96_08710) pbp1a 1715720..1717885 (+) 2166 WP_049519577.1 penicillin-binding protein PBP1A -
  QWH96_RS08715 (QWH96_08715) pepC 1717931..1719262 (-) 1332 WP_003062257.1 aminopeptidase C -
  QWH96_RS08720 (QWH96_08720) nadE 1719443..1720267 (-) 825 WP_003059694.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23336.95 Da        Isoelectric Point: 9.9487

>NTDB_id=776871 QWH96_RS08705 WP_003060942.1 1715125..1715733(+) (recU) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MVNYPHNLIRQKAPSVPKQSKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPIQIVKVDYPKRSRAKIIEAYF
RQASTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMAAVVEQNGICFVLLHFSTLKETYYLPARALIAFYQID
KGNKSMPLDYIRKHGFKIVIGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=776871 QWH96_RS08705 WP_003060942.1 1715125..1715733(+) (recU) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGGTCAACTACCCTCATAATCTTATTCGACAAAAAGCACCTTCCGTGCCAAAGCAATCAAAACAAAATAAGGTAGATTT
TGCCAATCGAGGCATGTCTTTTGAAGCGGCTATCAACGCGACAAATGATTATTATTTATCGCGGCAAATTGCTGTTATTC
ATAAAAAACCTACCCCCATCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGTGCGAAAATCATTGAAGCGTACTTT
AGACAAGCTTCAACGACAGATTATTCTGGGGTTTACAAGGGGCATTATATTGATTTTGAGGCCAAGGAAACCAGACAAAA
AACAGCCATGCCTATGAAAAATTTTCATCTCCATCAGATTGAGCACATGGCAGCTGTTGTGGAACAAAATGGAATTTGCT
TTGTCTTACTTCACTTTTCAACACTGAAAGAAACCTACTATCTGCCTGCTCGGGCTCTTATTGCTTTTTATCAGATTGAT
AAGGGGAACAAATCAATGCCCCTCGATTATATCAGAAAACATGGCTTTAAGATAGTTATTGGAGCCTTTCCACAAGTCCC
TTATCTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5