Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PG915_RS02810 Genome accession   NZ_CP115920
Coordinates   607663..608889 (-) Length   408 a.a.
NCBI ID   WP_353497779.1    Uniprot ID   -
Organism   Vibrio chaetopteri strain CB1-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 602663..613889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS02775 (PG915_02770) rimM 602925..603455 (+) 531 WP_353498648.1 ribosome maturation factor RimM -
  PG915_RS02780 (PG915_02775) trmD 603491..604240 (+) 750 WP_353497775.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PG915_RS02785 (PG915_02780) rplS 604283..604636 (+) 354 WP_006074418.1 50S ribosomal protein L19 -
  PG915_RS02790 (PG915_02785) yacG 605120..605314 (-) 195 WP_353497776.1 DNA gyrase inhibitor YacG -
  PG915_RS02795 (PG915_02790) zapD 605368..606108 (-) 741 WP_338163453.1 cell division protein ZapD -
  PG915_RS02800 (PG915_02795) coaE 606140..606748 (-) 609 WP_353497777.1 dephospho-CoA kinase -
  PG915_RS02805 (PG915_02800) pilD 606748..607620 (-) 873 WP_353497778.1 prepilin peptidase Machinery gene
  PG915_RS02810 (PG915_02805) pilC 607663..608889 (-) 1227 WP_353497779.1 type II secretion system F family protein Machinery gene
  PG915_RS02815 (PG915_02810) pilB 608906..610594 (-) 1689 WP_353498649.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PG915_RS02820 (PG915_02815) - 610601..611026 (-) 426 WP_353497780.1 pilin -
  PG915_RS02825 (PG915_02820) nadC 611296..612186 (-) 891 WP_353497781.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PG915_RS02830 (PG915_02825) ampD 612372..612935 (+) 564 WP_353498650.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45317.21 Da        Isoelectric Point: 10.3382

>NTDB_id=774444 PG915_RS02810 WP_353497779.1 607663..608889(-) (pilC) [Vibrio chaetopteri strain CB1-14]
MGKKLEPTLKAFHWKGVNSQGKKVSGQTLALTEPEARETLKQQHIQVRKLRKRSISTWTKLTQRIKGKDITILTRQLATM
LSTGIPIVHAIKLIADNQAKAEMKSILSQISKGLEAGTPISRVMQVASRHFDSFYVDMVATGENSGNLAGVFDRLADYRE
KQEMLRSKVVKALIYPVMILLVSLGVTYLMLTTVVPEFESMFRGFNADLPWFTQQVLNLSAWFQQNGFLSINLFILATFG
LKVARQRSFSVRLYTSRLVLRIPIIGQVITKASIAKFSRTLSTSFSAGIPILSSIQASAKTADNLYYQQVIQSIHSDIVA
GTPIHLAMRQADAFPEMVLQMVMIGEESGTLDDMLNRVAAIYEAEVDNTVDNLGKILEPFIIVFLGTLVGGLVVAMYLPI
FNLMTVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=774444 PG915_RS02810 WP_353497779.1 607663..608889(-) (pilC) [Vibrio chaetopteri strain CB1-14]
ATGGGTAAAAAGCTCGAACCAACGCTCAAAGCGTTTCACTGGAAAGGCGTGAACAGCCAAGGTAAGAAAGTCTCAGGTCA
AACATTGGCTCTGACCGAGCCTGAGGCGCGTGAAACCCTCAAGCAGCAACATATCCAGGTTCGTAAACTCAGAAAACGCA
GCATTTCTACTTGGACTAAGCTGACTCAACGCATCAAAGGCAAAGACATCACCATCCTTACCCGCCAGCTTGCCACCATG
CTGAGCACAGGTATTCCCATTGTTCATGCCATCAAATTGATAGCTGACAATCAGGCCAAGGCAGAGATGAAATCGATACT
GTCGCAAATCAGCAAAGGACTGGAAGCCGGTACACCCATTTCACGCGTAATGCAGGTGGCTAGCCGCCACTTTGATAGCT
TTTATGTCGATATGGTCGCCACCGGAGAAAACTCAGGTAACTTAGCGGGTGTGTTTGATCGCTTAGCGGACTATCGTGAA
AAGCAAGAGATGCTGCGTTCCAAAGTGGTTAAAGCGCTGATTTATCCAGTCATGATCCTATTGGTTTCACTTGGTGTTAC
CTATCTGATGCTCACCACCGTAGTGCCAGAGTTTGAATCGATGTTTCGCGGCTTTAATGCCGACCTTCCTTGGTTTACTC
AGCAAGTGCTCAATCTTTCAGCGTGGTTTCAACAGAATGGTTTTCTGAGTATTAACCTGTTTATTCTTGCCACTTTTGGC
CTAAAGGTCGCTCGTCAGCGCAGTTTTAGCGTGCGGCTTTACACCAGTCGCCTTGTATTGCGAATACCTATCATAGGCCA
AGTGATCACTAAAGCCTCCATTGCCAAGTTCAGTCGCACTCTATCTACCAGCTTTAGCGCCGGAATACCGATATTATCGA
GCATACAAGCCAGTGCAAAAACCGCTGACAATCTCTATTACCAACAAGTGATTCAATCGATCCATTCCGATATTGTTGCC
GGTACACCAATCCATCTAGCGATGCGTCAAGCGGATGCCTTTCCCGAAATGGTGCTGCAAATGGTAATGATTGGTGAAGA
GTCCGGCACCCTTGATGACATGCTCAATCGCGTGGCGGCCATCTATGAAGCGGAAGTCGATAATACCGTTGATAATCTGG
GTAAGATCCTCGAGCCATTTATCATTGTTTTTCTAGGAACCCTCGTTGGTGGGCTTGTGGTCGCAATGTACCTTCCTATC
TTTAACTTAATGACCGTAATAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

67

98.039

0.657
  pilC Vibrio campbellii strain DS40M4

62.899

99.755

0.627
  pilC Acinetobacter baylyi ADP1

39.706

100

0.397
  pilC Acinetobacter baumannii D1279779

39.295

97.304

0.382
  pilC Legionella pneumophila strain ERS1305867

37.871

99.02

0.375
  pilG Neisseria gonorrhoeae MS11

38.095

97.794

0.373
  pilC Pseudomonas stutzeri DSM 10701

38.131

97.059

0.37
  pilG Neisseria meningitidis 44/76-A

37.594

97.794

0.368