Detailed information NTG0774443

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PG915_RS02805
• Genome accession: NZ_CP115920
• Coordinates: 606748..607620 (-)
• Length: 290 a.a.
• NCBI ID: WP_353497778.1
• Uniprot ID: A0AAU8BJI0
• Organism: Vibrio chaetopteri strain CB1-14
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 601748..612620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PG915_RS02770 (PG915_02765)	rpsP	602630..602878 (+)	249	WP_031494887.1	30S ribosomal protein S16	-
PG915_RS02775 (PG915_02770)	rimM	602925..603455 (+)	531	WP_353498648.1	ribosome maturation factor RimM	-
PG915_RS02780 (PG915_02775)	trmD	603491..604240 (+)	750	WP_353497775.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PG915_RS02785 (PG915_02780)	rplS	604283..604636 (+)	354	WP_006074418.1	50S ribosomal protein L19	-
PG915_RS02790 (PG915_02785)	yacG	605120..605314 (-)	195	WP_353497776.1	DNA gyrase inhibitor YacG	-
PG915_RS02795 (PG915_02790)	zapD	605368..606108 (-)	741	WP_338163453.1	cell division protein ZapD	-
PG915_RS02800 (PG915_02795)	coaE	606140..606748 (-)	609	WP_353497777.1	dephospho-CoA kinase	-
PG915_RS02805 (PG915_02800)	pilD	606748..607620 (-)	873	WP_353497778.1	prepilin peptidase	Machinery gene
PG915_RS02810 (PG915_02805)	pilC	607663..608889 (-)	1227	WP_353497779.1	type II secretion system F family protein	Machinery gene
PG915_RS02815 (PG915_02810)	pilB	608906..610594 (-)	1689	WP_353498649.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PG915_RS02820 (PG915_02815)	-	610601..611026 (-)	426	WP_353497780.1	pilin	-
PG915_RS02825 (PG915_02820)	nadC	611296..612186 (-)	891	WP_353497781.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32164.30 Da
• Isoelectric Point: 6.4664

>NTDB_id=774443 PG915_RS02805 WP_353497778.1 606748..607620(-) (pilD) [Vibrio chaetopteri strain CB1-14]
MDVLIYYPWLFVLFAAILGLIVGSFLNVVIHRLPIMMERGWREECAEAFPEYKITPPEGRFDLSIPRSSCPSCNTPIRIV
DNIPLLSWLLLKGRCRHCDNRISIRYPLVELLTAVLSGTVAWQLGFSFYSVALIAMTFVLIAATFIDLDTMLLPDQLTLP
LLWTGIALALFGISPITLQDSVIGAIAGYLCLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWAHLPVIILLSSVVGV
VFGLIQLRMQNKGLDVAFPFGPYLAIAGWVSALWGDAITHFYLATVTGVY

Nucleotide

• Length: 873 bp

>NTDB_id=774443 PG915_RS02805 WP_353497778.1 606748..607620(-) (pilD) [Vibrio chaetopteri strain CB1-14]
ATGGACGTGTTGATTTATTACCCTTGGTTGTTTGTTTTATTCGCAGCCATTCTTGGCCTTATTGTCGGAAGCTTTCTCAA
TGTGGTGATCCACCGATTGCCCATCATGATGGAGCGCGGCTGGCGCGAAGAGTGTGCAGAAGCCTTCCCTGAATACAAGA
TTACGCCACCAGAAGGACGCTTTGATCTCAGCATTCCAAGAAGCAGCTGCCCATCATGCAACACGCCCATCCGTATTGTC
GACAACATCCCGCTGTTAAGCTGGCTGTTGCTCAAAGGTCGCTGCCGTCACTGTGACAACAGAATCAGTATCCGCTATCC
ACTAGTCGAGCTGCTCACCGCCGTCCTTAGCGGCACTGTCGCTTGGCAGCTGGGTTTTAGCTTCTACAGTGTGGCGCTGA
TTGCCATGACGTTTGTGCTTATCGCGGCAACCTTTATCGACCTTGATACTATGCTACTGCCCGACCAACTAACTCTACCG
CTACTCTGGACAGGTATAGCCCTTGCGCTATTCGGCATCTCACCAATTACACTGCAAGATTCCGTGATTGGCGCTATCGC
CGGTTACCTATGTTTATGGTCTGTCTATTGGCTATTTAAGCTAGTGACGGGTAAAGAAGGTATGGGCTATGGCGATTTCA
AGCTGCTCGCGGCTCTGGGCGCTTGGCTTGGCTGGGCACATCTGCCAGTGATTATTTTACTTTCCTCAGTTGTTGGCGTT
GTGTTTGGTTTGATTCAGCTTAGAATGCAAAACAAAGGTTTAGATGTGGCGTTTCCTTTTGGTCCTTACCTAGCAATTGC
AGGCTGGGTTAGCGCTCTATGGGGTGATGCCATCACGCACTTCTATTTGGCGACGGTAACGGGAGTATACTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	72.664	99.655	0.724
pilD	Vibrio cholerae strain A1552	69.444	99.31	0.69
pilD	Acinetobacter nosocomialis M2	52.941	93.793	0.497
pilD	Acinetobacter baumannii D1279779	52.574	93.793	0.493
pilD	Neisseria gonorrhoeae MS11	50	92.414	0.462