Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PAK23_RS03880 Genome accession   NZ_CP115817
Coordinates   842562..843782 (-) Length   406 a.a.
NCBI ID   WP_276488425.1    Uniprot ID   -
Organism   Pseudomonas mendocina strain GD22SC3150TT     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 837562..848782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAK23_RS03840 - 838109..838282 (-) 174 WP_276488420.1 DUF3094 family protein -
  PAK23_RS03845 - 838307..838855 (-) 549 WP_276488421.1 MOSC domain-containing protein -
  PAK23_RS03850 - 838852..839481 (-) 630 WP_276488422.1 DUF1780 domain-containing protein -
  PAK23_RS03855 - 839680..840369 (+) 690 WP_264146206.1 energy-coupling factor ABC transporter permease -
  PAK23_RS03860 - 840475..840690 (+) 216 WP_264146205.1 hypothetical protein -
  PAK23_RS03865 yacG 840727..840921 (-) 195 WP_264146204.1 DNA gyrase inhibitor YacG -
  PAK23_RS03870 coaE 840918..841526 (-) 609 WP_276488423.1 dephospho-CoA kinase -
  PAK23_RS03875 pilD 841692..842558 (-) 867 WP_276488424.1 A24 family peptidase Machinery gene
  PAK23_RS03880 pilC 842562..843782 (-) 1221 WP_276488425.1 type II secretion system F family protein Machinery gene
  PAK23_RS03885 pilB 843786..845483 (-) 1698 WP_276488426.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PAK23_RS03890 - 845715..845900 (+) 186 WP_276488427.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PAK23_RS03895 - 845916..846383 (+) 468 WP_276488428.1 hypothetical protein -
  PAK23_RS03900 pilA 846445..846621 (+) 177 WP_276488429.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  PAK23_RS03905 - 846627..847442 (+) 816 WP_276488430.1 hypothetical protein -
  PAK23_RS03910 - 847465..848283 (+) 819 WP_276488431.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44472.12 Da        Isoelectric Point: 9.7208

>NTDB_id=773802 PAK23_RS03880 WP_276488425.1 842562..843782(-) (pilC) [Pseudomonas mendocina strain GD22SC3150TT]
MAEKALKTSVFAWEGTDRKGSKIKGEISGQSPALVKAQLRKQGINPLKVRKKAVSLFNAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIAEGFDNPNMRKLIDEIKQEVAAGNSFATSLRKKPEFFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAVIVTAILLIKVVPQFESVFEGFGAQLPAFTMMVVNLSRWLQEWWFLVLFGLFISIYSFS
QAYKRSEKFRDSLDRALLKAPIVGDILYKAVVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVNRIKNDVSSGS
QLNFSMRNTGIFPTMAIQMTAIGEEAGSLDEMLDKTASYYEAEVDNAVDNLTTLMEPLIMSVLGVLVGGLIVAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=773802 PAK23_RS03880 WP_276488425.1 842562..843782(-) (pilC) [Pseudomonas mendocina strain GD22SC3150TT]
ATGGCGGAAAAAGCACTGAAAACCAGCGTATTCGCCTGGGAAGGTACCGACCGAAAAGGCAGCAAGATCAAGGGAGAGAT
TTCTGGCCAATCCCCTGCACTGGTAAAAGCCCAGTTGCGCAAGCAGGGTATCAACCCACTCAAAGTACGTAAAAAGGCCG
TTTCGCTGTTCAACGCGGGCAAAAAGATCAAGCCGATGGATATCGCCTTGTTCACCCGCCAGATGGCCACGATGATGAAA
GCCGGCGTCCCCCTGCTGCAGTCGTTCGACATCATCGCCGAAGGCTTCGACAACCCGAACATGCGCAAGTTGATCGACGA
GATCAAGCAGGAAGTGGCCGCCGGTAACAGCTTCGCCACCTCATTGCGCAAGAAACCGGAGTTCTTCGACGACTTGTACT
GCAACCTGGTTGATTCAGGCGAACAGTCCGGTGCGTTGGAAACGCTGCTGGACAGGGTTGCCACCTATAAGGAAAAAACC
GAAGCACTGAAGGCAAAGATCAAGAAGGCAATGACCTACCCCATCGCGGTTATCGTGGTTGCCGTGATTGTGACTGCAAT
TCTGCTGATCAAGGTCGTGCCTCAGTTCGAGAGCGTATTCGAAGGCTTTGGTGCACAACTGCCGGCCTTTACGATGATGG
TGGTCAACCTCTCCAGATGGCTGCAGGAGTGGTGGTTTCTTGTGCTGTTTGGCCTATTTATTTCCATCTACAGTTTCAGC
CAAGCCTATAAGCGCTCGGAGAAGTTCCGCGACTCACTGGATAGAGCATTGCTCAAGGCCCCCATCGTAGGGGACATTCT
CTATAAGGCCGTAGTGGCACGCTTCGCCCGCACCCTGGCAACGACCTTTGCGGCAGGTGTTCCACTGGTTGACGCCCTGG
ACTCTGTAGCAGGCGCAACTGGCAATGTGGTATTTCGCAATGCTGTCAACCGTATCAAGAACGATGTCTCGTCGGGCTCT
CAGTTGAATTTCTCCATGCGCAATACCGGCATTTTCCCCACCATGGCCATCCAGATGACCGCCATCGGCGAAGAGGCCGG
CTCACTGGATGAAATGCTGGACAAGACTGCCAGCTACTATGAAGCCGAAGTGGATAACGCAGTAGATAACCTCACTACGC
TGATGGAACCACTGATCATGTCCGTACTAGGCGTGCTGGTTGGCGGTTTGATCGTTGCCATGTATCTGCCCATTTTCCAA
CTCGGTTCGGTGGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.247

99.754

0.8
  pilC Acinetobacter baylyi ADP1

61.576

100

0.616
  pilC Acinetobacter baumannii D1279779

61.235

99.754

0.611
  pilC Legionella pneumophila strain ERS1305867

54.798

97.537

0.534
  pilG Neisseria gonorrhoeae MS11

45.274

99.015

0.448
  pilG Neisseria meningitidis 44/76-A

45.274

99.015

0.448
  pilC Vibrio cholerae strain A1552

42.365

100

0.424
  pilC Vibrio campbellii strain DS40M4

42

98.522

0.414