Detailed information NTG0773801

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PAK23_RS03875
• Genome accession: NZ_CP115817
• Coordinates: 841692..842558 (-)
• Length: 288 a.a.
• NCBI ID: WP_276488424.1
• Uniprot ID: -
• Organism: Pseudomonas mendocina strain GD22SC3150TT
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 836692..847558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PAK23_RS03835	-	836744..838045 (-)	1302	WP_276488419.1	NAD(P)/FAD-dependent oxidoreductase	-
PAK23_RS03840	-	838109..838282 (-)	174	WP_276488420.1	DUF3094 family protein	-
PAK23_RS03845	-	838307..838855 (-)	549	WP_276488421.1	MOSC domain-containing protein	-
PAK23_RS03850	-	838852..839481 (-)	630	WP_276488422.1	DUF1780 domain-containing protein	-
PAK23_RS03855	-	839680..840369 (+)	690	WP_264146206.1	energy-coupling factor ABC transporter permease	-
PAK23_RS03860	-	840475..840690 (+)	216	WP_264146205.1	hypothetical protein	-
PAK23_RS03865	yacG	840727..840921 (-)	195	WP_264146204.1	DNA gyrase inhibitor YacG	-
PAK23_RS03870	coaE	840918..841526 (-)	609	WP_276488423.1	dephospho-CoA kinase	-
PAK23_RS03875	pilD	841692..842558 (-)	867	WP_276488424.1	A24 family peptidase	Machinery gene
PAK23_RS03880	pilC	842562..843782 (-)	1221	WP_276488425.1	type II secretion system F family protein	Machinery gene
PAK23_RS03885	pilB	843786..845483 (-)	1698	WP_276488426.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PAK23_RS03890	-	845715..845900 (+)	186	WP_276488427.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PAK23_RS03895	-	845916..846383 (+)	468	WP_276488428.1	hypothetical protein	-
PAK23_RS03900	pilA	846445..846621 (+)	177	WP_276488429.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
PAK23_RS03905	-	846627..847442 (+)	816	WP_276488430.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31778.71 Da
• Isoelectric Point: 6.6817

>NTDB_id=773801 PAK23_RS03875 WP_276488424.1 841692..842558(-) (pilD) [Pseudomonas mendocina strain GD22SC3150TT]
MALDFMADNLSAFVFVCVVFGLLIGSFLNVVVYRLPLMLQRDWQSQAREVLELPPTPTQQTFNLVLPNSSCPRCGHEIRP
WENIPVISYLFLRGKCSSCKTPISKRYPVVEVACGVISGYVAWHLGFTWQAGTMLLLAWGLLAMSLIDADHQILPDVLVL
PLLWLGLIVNYFGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGA
VLGVILLRLRGSDSGTPIPFGPYLAIAGWIALLWGDVITGSYLKFAGF

Nucleotide

• Length: 867 bp

>NTDB_id=773801 PAK23_RS03875 WP_276488424.1 841692..842558(-) (pilD) [Pseudomonas mendocina strain GD22SC3150TT]
ATGGCGCTCGACTTTATGGCCGACAATCTGTCGGCCTTTGTTTTTGTCTGTGTGGTTTTCGGTCTACTGATCGGCAGCTT
CCTCAATGTAGTGGTCTACCGCCTACCGCTGATGCTCCAGCGCGACTGGCAAAGCCAGGCCCGTGAAGTACTGGAATTGC
CACCAACCCCCACCCAACAAACTTTCAACTTAGTCCTGCCCAACTCCTCATGCCCTCGGTGCGGCCATGAGATTCGCCCC
TGGGAGAACATCCCGGTTATCAGCTACCTGTTCCTGCGCGGCAAGTGCTCAAGCTGTAAAACGCCGATCAGCAAGCGCTA
CCCCGTGGTAGAAGTGGCCTGCGGCGTGATTTCCGGCTACGTCGCCTGGCATTTAGGCTTTACCTGGCAAGCGGGTACGA
TGTTGTTGCTGGCCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCCGATCATCAGATTCTGCCCGACGTACTGGTACTG
CCGCTGCTGTGGCTAGGGCTGATCGTCAATTACTTCGGGCTGTTTACCAGCCTGGAAGACGCGCTGTGGGGGGCGATTGC
CGGCTATCTGAGCCTATGGTCGGTGTACTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGTTATGGCGACTTCA
AGCTGCTGGCCATGCTTGGAGCCTGGGGCGGCTGGCAGATACTGCCGCTGACCATTCTGCTGTCGTCGCTGGTCGGCGCG
GTGCTCGGTGTGATCCTGCTGCGCCTGCGCGGCAGCGATTCCGGTACGCCAATTCCCTTCGGCCCGTATCTGGCGATTGC
CGGATGGATCGCATTGCTCTGGGGCGATGTGATTACCGGCAGTTACCTGAAGTTCGCCGGTTTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	51.601	97.569	0.503
pilD	Acinetobacter nosocomialis M2	51.246	97.569	0.5
pilD	Vibrio cholerae strain A1552	52.19	95.139	0.497
pilD	Vibrio campbellii strain DS40M4	51.648	94.792	0.49
pilD	Neisseria gonorrhoeae MS11	50.192	90.625	0.455