Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PF552_RS17320 Genome accession   NZ_CP115632
Coordinates   3595684..3596910 (+) Length   408 a.a.
NCBI ID   WP_000279218.1    Uniprot ID   A0A836M511
Organism   Acinetobacter baumannii strain 2022CK-00063     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3590684..3601910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF552_RS17285 (PF552_17285) rimP 3591349..3591873 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  PF552_RS17305 (PF552_17305) secG 3592515..3592844 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  PF552_RS17310 (PF552_17310) tpiA 3592857..3593651 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  PF552_RS17315 (PF552_17315) pilB 3593942..3595654 (+) 1713 Protein_3380 type IV-A pilus assembly ATPase PilB -
  PF552_RS17320 (PF552_17320) pilC 3595684..3596910 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  PF552_RS17325 (PF552_17325) pilD 3596910..3597770 (+) 861 WP_001152273.1 A24 family peptidase Machinery gene
  PF552_RS17330 (PF552_17330) coaE 3597772..3598368 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  PF552_RS17335 (PF552_17335) - 3598365..3599279 (-) 915 WP_000075014.1 DMT family transporter -
  PF552_RS17340 (PF552_17340) rlmB 3599315..3600064 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PF552_RS17345 (PF552_17345) - 3600166..3600492 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  PF552_RS17350 (PF552_17350) - 3600569..3601879 (-) 1311 WP_031959605.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44923.43 Da        Isoelectric Point: 9.9566

>NTDB_id=772986 PF552_RS17320 WP_000279218.1 3595684..3596910(+) (pilC) [Acinetobacter baumannii strain 2022CK-00063]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=772986 PF552_RS17320 WP_000279218.1 3595684..3596910(+) (pilC) [Acinetobacter baumannii strain 2022CK-00063]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCCATTATTGCCCGTTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATCCGGGAAGATGTCGCA
ACAGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCGATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M511

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.51

100

0.995
  pilC Acinetobacter baylyi ADP1

86.275

100

0.863
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

47.368

97.794

0.463
  pilG Neisseria meningitidis 44/76-A

47.368

97.794

0.463
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36